Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq114 138 3e-27 seq3172 102 2e-16 seq3350 93.3 1e-13 >seq114 Length=54951 Score = 138 bits (152), Expect = 3e-27 Identities = 710/1121 (63%), Gaps = 21/1121 (2%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| || ||||| | || |||| ||| | ||| || | || | Sbjct 36550 CCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACCTC 36609 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | ||||| | ||||| || ||||| || || || | |||||| Sbjct 36610 GGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGT 36669 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || | || || || | || || || || Sbjct 36670 CAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 36729 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG---AGTGACCAAGaaaaaaaT 349768 ||||| ||||| || || || || || ||||| || | | | || | || || Sbjct 36730 CCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAAGGCCACTGGC---GAGCGCAAC 36786 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || || ||| | |||||||||||||| ||||| || || || || | || ||| Sbjct 36787 GTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGGAG 36846 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || || || || | || || ||||| || || |||||||| || || ||||| Sbjct 36847 GGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTGAC 36906 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948 || || || || || || || || ||||| ||| | |||| ||| | ||| Sbjct 36907 AACCGCCTTGTCAACCACTTCGTCAACGAATTCAAGAG-AAAGCACAAAAAGGACTTGAC 36965 Query 349949 GA-TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007 | || || | || | || || || | ||||| || || ||||| ||||| || | Sbjct 36966 TACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCT 37025 Query 350008 AT-CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCT 350066 | || || || | || ||||| || || || || || || || || | || |||| Sbjct 37026 GTCCAGCT-CTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCT 37084 Query 350067 TTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAA 350126 | || || || |||||||| || || || | || ||| || || | | || | Sbjct 37085 ACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCA 37144 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAA 350185 |||| ||||| || || | ||||| || || | | | || | | | || Sbjct 37145 TGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCG-TCCACGAG 37203 Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245 | || | |||||||| || || ||||| || || | || || | | || || || Sbjct 37204 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 37263 Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 || || ||||| || || | || || || || ||||| || ||||| || |||||| Sbjct 37264 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 37323 Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT-CTAAAATT-----GATGATCTA 350359 || || ||||| |||| | || || | | | || || || | | || | Sbjct 37324 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 37380 Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419 | || || ||||| |||| || || || || | || || |||||| || |||||| Sbjct 37381 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 37440 Query 350420 GTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479 ||| || | || | || | || || || |||||| | || || || || Sbjct 37441 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 37500 Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539 || || ||||| | || || || || || || ||||| ||||||||||| || Sbjct 37501 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 37560 Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599 || || || || || | || || | | ||||| || || | || ||| Sbjct 37561 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 37620 Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 || ||||| || ||| | ||||| ||||| | || ||||| Sbjct 37621 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTAT 37661 Score = 100 bits (110), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || ||||| || ||||| || || || || | Sbjct 54674 TTTGCATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGT 54615 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| ||||| || || ||||| ||||| || || ||||||| Sbjct 54614 AGTCGCTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGAT 54555 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| ||||| || ||||| || || ||| || || || || || | || || Sbjct 54554 CCGGGGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAC 54496 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || || | ||||| ||||| Sbjct 54495 GACTCGACCTCGAGGGTGATGGTCTTGCCGGT 54464 >seq3172 Length=37270 Score = 102 bits (112), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| ||||| | || |||||| ||||||| |||||||||||||||||||| || Sbjct 6518 CGTGGAACACCGAGAGTGACATTC---TTAGATGACACACCAGCAAAGTGGAAAGTGTTC 6462 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||| || || ||||| |||| ||||| ||||| || Sbjct 6461 AGTGTCATCTGTGTAGCAGGCTCACCGATGGATTGCGCGGCAAGCACGCCCACCATCTCG 6402 Query 377578 CCAGGATTGACAATAGC 377594 ||||| |||| || || Sbjct 6401 CCAGGGCTGACGATCGC 6385 >seq3350 Length=15240 Score = 93.3 bits (102), Expect = 1e-13 Identities = 195/289 (67%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | ||||| || ||||| || || || || ||| | | || || || || || Sbjct 1009 GCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCTCAGAGAGCCGCTACCAAGGACGCC 950 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || | ||||| || | | | || || ||||| || || || | Sbjct 949 GGTACCATTGCCGGTCTGAATGTCCTCCGTGTTGTCAACGAGCCCACCGCGGCCGCTCTG 890 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----aTATTCTTATTTTTGATTT 349785 || || || || || || | | |||| |||| || | || || | | ||| | Sbjct 889 GCCTACGGTCTGGACAAGAAGGATGAC-AAGACTGAACGCCAGATCATTGTCTACGATCT 831 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||||||||| ||||| || | || || | || ||||| |||| || || | Sbjct 830 TGGTGGTGGTACTTTCGATGTTTCCATTCTTACTGTCGACGAGGGCGTTTTCGAGGTCCA 771 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 || || |||||||| || || |||||||| || || ||||| || ||| Sbjct 770 GGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGT 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515184392405618