Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 239 5e-58
seq114 127 2e-24
seq3263 102 9e-17
seq1228 98.7 1e-15
>seq1
Length=193982
Score = 239 bits (264), Expect = 5e-58
Identities = 738/1121 (66%), Gaps = 43/1121 (4%)
Strand=Plus/Plus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||| | |||| || |||| ||||| || ||| |||||| ||||| ||
Sbjct 92146 CCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGG 92205
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
||| ||| ||||||| |||||| ||| | | || || ||||| || || ||| ||
Sbjct 92206 GCCGTCCCTCTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAA 92265
Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719
|| |||||| | || | ||| || ||||||| || | | | ||
Sbjct 92266 GATTTGAATGTTCAG-CTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGA 92324
Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779
| ||||||| || || | || || | ||||| || ||||| ||| |||| | ||
Sbjct 92325 AAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTT-GCTCTTC 92383
Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AAC 80837
| ||| || |||| |||||| |||| | || |||| |||||| || | || ||
Sbjct 92384 CTGGCTTCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATT-CTTGACAAG 92442
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG--TTCCCCTTCA----CAAA 80891
||| | ||||| || ||||| |||| |||||| | |||| | || | ||
Sbjct 92443 CACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAA 92502
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
| || || ||| ||||| | |||||||| || || || |||| | | || ||||
Sbjct 92503 GGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTC 92562
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
||||||||| ||||| || || ||| || || ||||| |||||||| |||
Sbjct 92563 GACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTT 92622
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
| |||||| ||||||||| ||||| | ||| ||||||| |||||||| | || |||
Sbjct 92623 GCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAG 92682
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||| |||| ||| | || | || ||| || ||| || || | ||||
Sbjct 92683 GATCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCATA 92742
Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191
|| |||| | ||||| | |||| | | || | || | |||||||||||
Sbjct 92743 CTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTT 92802
Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGG 81248
||||||||| ||| ||| |||| |||| ||| ||| ||||||||| || ||
Sbjct 92803 AGGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGG 92859
Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306
|||||||| ||| ||| ||||| || |||||| ||||||| | || |||||
Sbjct 92860 AATCCAGAGAGCGTAGAAAAGGTCACG--AGCGCGAACCTCCTCTTTTCCGTGGTTCTTA 92917
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | ||||||||| | || || |||||||| ||||| || || | ||||| |
Sbjct 92918 CGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCA 92977
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| ||| | |||||||||| ||||| |||||||| ||| | ||||| | |
Sbjct 92978 CCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGC 93037
Query 81424 ATAGGGATGATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481
|||||||||| || | || ||| ||||| ||||| | || || |||| |
Sbjct 93038 ATAGGGATGAGGCCGT-TG-CTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCAC 93095
Query 81482 GCACCTTGCTGATTGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| | ||| | |||| |||||||| ||||| | ||| || ||| |||||
Sbjct 93096 GGA---TGCGG--TGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 93150
Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596
|||| ||| || || || ||||| |||||||| | |||||||| | | ||| ||
Sbjct 93151 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 93210
Query 81597 GCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635
| || |||||| || ||| || |||||||||||
Sbjct 93211 AGAAGCCAACTGAGG--CTTGGGAGTACCAGCATTGAACAG 93249
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| |||||| || | ||||
Sbjct 91631 GCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGC 91690
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || ||| ||| | | ||||||| || |||| ||| || || ||||| || |||
Sbjct 91691 ATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGACTGCGATTGA 91750
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
|||||| || ||||| || || |||||
Sbjct 91751 TCGATGAACGCACCACGGTCGGCGGCCAT 91779
>seq114
Length=54951
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || || ||||| ||||| | || | ||| | || | |||
Sbjct 54747 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTCAAGAGC 54806
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| ||||| || ||||||||||| || ||||| || || |||
Sbjct 54807 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAG 54866
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | || || || | ||||| || |||| ||||| |||||| ||
Sbjct 54867 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 54926
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||| ||||| ||
Sbjct 54927 CTCGTCCTCCGTCTCCGCGGCGG 54949
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| || | ||| | || | |||
Sbjct 54464 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGAGC 54523
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || ||||||||||| || ||||| || || |||||||| || || || ||||| |||
Sbjct 54524 AAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGCAAG 54583
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
|| || ||||||| || || || ||| ||||| || |||| ||||| || || |||||
Sbjct 54584 CAGCTTGAGGATGGCCGCACTCTCAGC-GACTACAACATCCAGAAGGAGTCGACCCTTCA 54642
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || || |||||
Sbjct 54643 CCTCGTCCTCCGCCTGCGTGGTGG 54666
>seq3263
Length=93059
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 35820 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35761
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| || || ||||| || || |
Sbjct 35760 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35701
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 35700 CGCCTGCGTGGTGG 35687
>seq1228
Length=59519
Score = 98.7 bits (108), Expect = 1e-15
Identities = 269/412 (65%), Gaps = 0/412 (0%)
Strand=Plus/Minus
Query 31991 TCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACA 32050
||||||| || ||||||||| | ||| ||||| |||||||||| ||| || ||||
Sbjct 17942 TCAAGCCGGGTCAACGCAAGGTGCTTTACACCTGCTTCAAGAAGAATCTGAGGAAGGACA 17883
Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110
| ||||| |||| | || | || | || || |||| | |||| || |
Sbjct 17882 TCAAGGTCAACGAGCTCGCCGGTTTTGTTGGAGGCTTGACCAACTATGCCTACGGTGATG 17823
Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170
| || |||||| || ||||| || ||||| ||||| || || | || || | |
Sbjct 17822 CCTCACTCCAGCAAACGATTGTTGGTCTGGCTCAAAACTTCGTTGGCTCCAACAATATCA 17763
Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230
| || || ||||| || | || || | || || || || | |||||||| |
Sbjct 17762 ATTTGCTTGAGCCTAGCGGTAACTTCGGTTCTCGTATCCAGGGCGGTAGCGATGCTGCCA 17703
Query 32231 GCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290
|| |||||||||| | ||| || || | || | || || ||||| || || |
Sbjct 17702 GCGCCCGTTACATTTACACGCGACTTTCTCCGCTTGCCCGTAAACTTTTCCACGTATCCG 17643
Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350
| || || |||| || || || |||||||| ||| ||||||| | |||
Sbjct 17642 ATGAGCCGCTGCTTGAGCACGATCAGGATGACGGAAAGCCAATCGAGCCAACCATGTACG 17583
Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
||| | |||||||||||| | |||||||| || || || ||||| || ||
Sbjct 17582 TTCCTATTCTTCCGATGATCCTTGTGAACGGCGCGGACGGTATCGGCACTGG 17531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570284693258720
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