Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1393 127 2e-24 >seq1393 Length=54601 Score = 127 bits (140), Expect = 2e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || ||||||||||| | | |||| || || || || || |||| || || | Sbjct 42372 GGCGTCAAGATCTGGGATGGTAACGGATCGCGCGAGTTCCTCGACAGTGTCGGCCTCTCG 42431 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||||||||||| | ||||| |||||||| ||||||||| | ||||| || || Sbjct 42432 CACCGCGAGGAGGGCGACCTAGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCT 42491 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500 ||||| || || |||| | ||||||| |||||| || | ||| |||||| | | || Sbjct 42492 GAGTA-CGTGGACGCGACGACGGACTACAGGGGACAAGGTGTGGATCAGCTGGCGGATGT 42550 Query 34501 GATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||||||| | ||| || || | || | | ||| | ||| |||||||||| || Sbjct 42551 GATCGACAAGCTTAAGAACAAGCCGTACGATCGCCGCATCATCATGAGCGCGTGGAATCC 42610 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG 34619 | ||| || |||||| || ||||| ||||||| || || ||||| |||| Sbjct 42611 GGCGGACCTGAAGAAGATGGCTCTGCCCCCTTGCCACATGTTCGCGCAGTTCTATGTCG 42669 Score = 127 bits (140), Expect = 2e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 |||| ||||| || || ||||||| ||||| || |||||| || ||| || Sbjct 42669 CGACATAGAACTGCGCGAACATGTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCG 42610 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | |||||||||| ||| | ||| | | || | || || ||| | ||||||||| Sbjct 42609 GATTCCACGCGCTCATGATGATGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCA 42550 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904 | | | |||||| ||| | || |||||| ||||||| | |||| || || ||||| Sbjct 42549 CATCCGCCAGCTGATCCACACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG-TACTCA 42491 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || || ||||| | ||||||||| |||||||| ||||| | |||||||||||| || Sbjct 42490 GCGCCGAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGC 42431 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | || || |||| || || || || || |||| | | ||||||||||| || || Sbjct 42430 GAGAGGCCGACACTGTCGAGGAACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCC 42372 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||| ||| | |||||| || || || | |||||||| || || || || |||||||| Sbjct 42737 GCTGCACTGTCTGCTCTACCAGCGGTCCTGTGACATGGGCTTGGGCGTTCCCTTCAACAT 42796 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||| ||||||||||||||| ||||| | || |||||| Sbjct 42797 TGCTTCGTACGCTCTGCTCACGCACATGTTGGCCCATGTC 42836 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || | ||||| ||||||||||||||| |||||||||||| || || || || Sbjct 42836 GACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCAATGTTGAAGGGAACGCCCAA 42777 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGC 6715 |||||||| | || || || |||||| | ||| |||| Sbjct 42776 GCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 42737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448242194572320