Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq114 131 4e-25
seq3263 87.8 4e-12
>seq114
Length=54951
Score = 131 bits (144), Expect = 4e-25
Identities = 141/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 54462 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGA 54521
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| ||||| || || ||||| ||||| || || |||||||| || |
Sbjct 54522 GCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGCA 54581
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || ||||| | ||||| ||| || ||| |||| || || || || || |
Sbjct 54582 AGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTTC 54641
Query 178123 ATCTTGT 178129
| || ||
Sbjct 54642 ACCTCGT 54648
Score = 118 bits (130), Expect = 3e-21
Identities = 129/170 (76%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAA 178001
|| || || || |||||||||||||| || ||| ||||||||||| ||||||||
Sbjct 54747 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC---GACACCATCGACAACGTCAAG 54803
Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061
||||| |||||||| || || || || ||||||||||| || || || ||||||||
Sbjct 54804 AGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGC 54863
Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111
|| |||||||| || || | ||||| |||| || ||| |||| || ||
Sbjct 54864 AAGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGA 54913
>seq3263
Length=93059
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || || || ||||||||||| || || |||||||| || || ||||||||
Sbjct 35820 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35761
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||||| | ||||| |||| || ||| |||| || || || || || || |||||
Sbjct 35760 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGT 35705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203675585361564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |