Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1094 257 1e-63 >seq1094 Length=88458 Score = 257 bits (284), Expect = 1e-63 Identities = 481/700 (69%), Gaps = 10/700 (1%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTG---CTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || |||||| || || ||| |||| || ||||| | || || Sbjct 25590 GTGTACTCGACGATTTCGCAGCACAGGTTGGAGCTACGA---ATGGTGCCAAGGTTCTTC 25534 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || || ||||| |||||||| | |||| | || | || || |||||| Sbjct 25533 TGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACC 25474 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CC 23238 || | ||||| |||||| ||| | ||||||| | ||| ||| | || | | || Sbjct 25473 TGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACA-GTCTCGCGACCACGACC 25415 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 || | ||| |||| | ||| | || || ||||| |||| || |||||| || || Sbjct 25414 CTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACC 25355 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || | | | || |||||||| |||| | || | ||||| || |||| || Sbjct 25354 AGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAA 25295 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || ||||| ||||||||||| || || || ||||| ||||||||||| ||| Sbjct 25294 GAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTG 25235 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| | || | |||| || || || |||||||||||||||||||| | ||| Sbjct 25234 GTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGC 25175 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || || || || | ||| || || ||||| || ||||| ||||| |||||||||||||| Sbjct 25174 GAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACAC 25115 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG-AACCTT 23597 | ||||| || | ||| |||||| | |||| || ||| || | | || Sbjct 25114 ACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG-TTAGTACCGGCAATGTAGCTGCCAG 25056 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | || || | | |||||||| | ||| || || ||| | | || || ||||| || | Sbjct 25055 TGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCAC 24996 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | ||||| ||||||||||| ||||| ||||| ||||| || | ||| | ||| | Sbjct 24995 AGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGC 24936 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 | |||| || || | ||||| ||| | || |||||| Sbjct 24935 AAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTGAACAG 24896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445736422209600