Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1094 107 2e-18 >seq1094 Length=88458 Score = 107 bits (118), Expect = 2e-18 Identities = 268/402 (67%), Gaps = 4/402 (1%) Strand=Plus/Minus Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741 |||| ||||||||||| || | || || | |||||||| |||||||| || | Sbjct 24839 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 24780 Query 63742 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 24779 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 24721 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 ||| || || || | | ||| || | || | ||| || ||||| || || Sbjct 24720 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 24661 Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920 | ||| ||||| || || || | ||| | || ||||||| || | ||||| Sbjct 24660 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 24601 Query 63921 ACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63979 || || || | || | ||| || || || ||||| ||||||| ||||| || || || Sbjct 24600 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 24542 Query 63980 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 64039 ||||||| | | ||| | || || | |||| | || || || | |||||| || || Sbjct 24541 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 24482 Query 64040 TGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || | ||| || | ||| || |||||||| || || ||||| Sbjct 24481 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629775244766400