Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4017 120 5e-23 seq4671 105 1e-18 >seq4017 Length=48868 Score = 120 bits (132), Expect = 5e-23 Identities = 209/316 (66%), Gaps = 50/316 (16%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 1575 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 1517 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533 ||||||||| ||||||||||| || ||||||||| | |||| Sbjct 1516 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGTATTTCTGCCAGTAAGTCCTGCTCCTC 1457 Query 16534 ------------------------------ATTGGTCTATGAAGAGATTCGTGATGTTTT 16563 | || |||| || |||| |||| ||| | Sbjct 1456 TCGCTCCCGCTGCCGCCGCTAACCCCCGCCAGTGATCTACGAGGAGACCCGTGGTGTCCT 1397 Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||||| ||||||| || ||| |||| ||||||| || ||| ||||||||||| || || Sbjct 1396 GAAGACCTTCCTCGAGGGCGTGATCCGTGATGCTGTCACCTACACCGAGCACGCCAAGCG 1337 Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683 ||||| ||||||||| | || |||||||||| | || | |||||||||| | || Sbjct 1336 CAAGACCGTCACCTCCCTCGACGTCGTCTATGCCCTCAAGAGGCAAGGCCGTACCCTCTA 1277 Query 16684 TGGTTTTGGAAGTTAA 16699 ||||| || ||||| Sbjct 1276 CGGTTTCGGCGGTTAA 1261 >seq4671 Length=18917 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || ||||||||||| || ||||||||||| |||| Sbjct 15529 CGCCAAGCGTCACCGCAAGATCT-TGCGCGATAACATCCAGGGTATCACCAAGCCCGCTA 15471 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| ||||| || ||||||||| | |||| Sbjct 15470 TCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 15429 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || || | |||| |||| | ||| ||||||| || || |||| ||||| Sbjct 15369 TGATCTACGAGGAAACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGATG 15310 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || ||||||| | Sbjct 15309 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 15250 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| | || ||||| || ||||| Sbjct 15249 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAA 15206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070281028340