Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 114 2e-20
seq4076 82.4 1e-10
>seq1094
Length=88458
Score = 114 bits (126), Expect = 2e-20
Identities = 273/410 (67%), Gaps = 2/410 (0%)
Strand=Plus/Minus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || || | || ||||| | | ||| |||| | || || || |||||
Sbjct 25356 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 25297
Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286
|||||||| |||||||| ||||| || ||| || || | | | | ||||| |||||
Sbjct 25296 AAGAGATCGGGAATCCAGAGAGCGTAGAAA-AGGTCACGAGCGCGAACCTCCTCTTTTCC 25238
Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346
||||| || ||||| || | | ||||| ||||||||| || | ||| ||
Sbjct 25237 GTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGAT 25178
Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406
||| | | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 25177 GGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTA 25118
Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466
|| | | ||| || || | ||||| | || || ||||||| || ||||| ||
Sbjct 25117 CACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCC 25058
Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526
| ||||||| || || ||||| || || || || | || ||||| | ||
Sbjct 25057 AGTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGC 24998
Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576
|| || | ||||| ||||||||||| |||||||| || ||||||
Sbjct 24997 ACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 24948
Score = 111 bits (122), Expect = 2e-19
Identities = 269/402 (67%), Gaps = 4/402 (1%)
Strand=Plus/Minus
Query 63631 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63690
|||| ||||||||||| || | || || | |||||||| |||||||| || |
Sbjct 24839 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 24780
Query 63691 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 24779 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 24721
Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809
| | ||| || || | | ||| || | || | ||| || ||||| || ||
Sbjct 24720 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 24661
Query 63810 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 63869
| ||| ||||| || || || | ||| | |||||||| | || | |||||
Sbjct 24660 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 24601
Query 63870 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 24600 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 24542
Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 63988
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 24541 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 24482
Query 63989 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|| ||||| || | ||| || |||||||| || || |||||
Sbjct 24481 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 24440
>seq4076
Length=19007
Score = 82.4 bits (90), Expect = 1e-10
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| ||| |||| ||||| || | | || || || |||||
Sbjct 10145 AACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAG 10204
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || | || ||||| ||||||||||| || ||||| || ||||| ||||| || ||
Sbjct 10205 AAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCG 10264
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452
|||||||| || || || || || || ||||| ||
Sbjct 10265 CTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATGAG 10302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622905306800800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |