Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2279 123 5e-23
seq4076 84.2 4e-11
>seq2279
Length=94676
Score = 123 bits (136), Expect = 5e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||||||||| |||| |||||| || || || |||| ||||||||||| |||
Sbjct 4287 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATTCTGCTCAAC 4228
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | ||||||||| |||| || ||||| | || ||||| || |
Sbjct 4227 CAGACTCACCTGCGTCTGAAGCGTGGCCACCGCTACGGTCTTCTGGGCCCCAACGGTTCC 4168
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
||||||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | |||
Sbjct 4167 GGTAAGACCACCCTCATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 4109
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || || || ||||||||| | |||||
Sbjct 4108 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 4067
Score = 91.5 bits (100), Expect = 3e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || |||| |||||||| ||||| ||||| || |||||||| || |||| |||||
Sbjct 3472 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACTCTCGTCAACGTCCT 3413
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
|||||| ||| | ||||| ||| || | | || ||||| || || ||
Sbjct 3412 GACTGGTGAGCTCATCCCCACTTCGGGTGAGGTCTACCACCACGAGAACATCCGTATTGC 3353
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||| ||| ||||||||| ||||| ||||| || || | |
Sbjct 3352 CTACATCAAGCAGCACGCCTTCGCCCACATCGACCACCACTTGGACTCTACCCCCTCCGA 3293
Query 280340 ATACATTCAGTGGCG 280354
||||| ||||||||
Sbjct 3292 GTACATCCAGTGGCG 3278
Score = 84.2 bits (92), Expect = 4e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| || || || ||| ||||| | ||| | | || ||
Sbjct 2883 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 2824
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| |||||| | |||||| ||||||| || ||||||||||||||||| || ||||| ||
Sbjct 2823 TC-GTGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 2765
Score = 84.2 bits (92), Expect = 4e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761
|| || || ||||||||||||||||||||||| || | || ||| | || | | |||
Sbjct 3927 TCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 3869
Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
||| | || ||||| || ||||| ||||||||||||||| || ||||| || |||||
Sbjct 3868 CGATATTCTTCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 3809
>seq4076
Length=19007
Score = 84.2 bits (92), Expect = 4e-11
Identities = 262/401 (65%), Gaps = 6/401 (1%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||
Sbjct 9887 TCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 9946
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| | ||| | ||| || || || | | |||||| || || ||||| |
Sbjct 9947 GAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATG 10006
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || | ||||||||||| | | |||| || | || || ||
Sbjct 10007 TACTGGCACATGAGAGTCGCGTTCATGCCAAGAAGAGCGAC-GGGGAGAGCGTCCGTGAG 10065
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
||| ||||| ||| | | || ||||| | || || || | | | |
Sbjct 10066 GAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACAGATTCGGGGCTGGG 10125
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGG--TGCAGACCCTCGTCG 251859
||| || | | ||| |||| || | | || || || |||| ||||| |||
Sbjct 10126 CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAA--GTCGGTATGCATGCCCTCATCG 10183
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
||| ||||| ||| ||||| | | || |||||||| | ||||| ||| ||||||||
Sbjct 10184 CGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAG 10243
Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960
|| || | | || || || ||| | | |||||||||
Sbjct 10244 AAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 10284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027765949924580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |