Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2279 123 5e-23 seq4076 84.2 4e-11 >seq2279 Length=94676 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 4287 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATTCTGCTCAAC 4228 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | ||||||||| |||| || ||||| | || ||||| || | Sbjct 4227 CAGACTCACCTGCGTCTGAAGCGTGGCCACCGCTACGGTCTTCTGGGCCCCAACGGTTCC 4168 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 4167 GGTAAGACCACCCTCATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 4109 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || || || ||||||||| | ||||| Sbjct 4108 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 4067 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || |||||||| || |||| ||||| Sbjct 3472 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACTCTCGTCAACGTCCT 3413 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | ||||| ||| || | | || ||||| || || || Sbjct 3412 GACTGGTGAGCTCATCCCCACTTCGGGTGAGGTCTACCACCACGAGAACATCCGTATTGC 3353 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| ||| ||||||||| ||||| ||||| || || | | Sbjct 3352 CTACATCAAGCAGCACGCCTTCGCCCACATCGACCACCACTTGGACTCTACCCCCTCCGA 3293 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 3292 GTACATCCAGTGGCG 3278 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 2883 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 2824 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 2823 TC-GTGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 2765 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 3927 TCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 3869 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || ||||| || ||||| ||||||||||||||| || ||||| || ||||| Sbjct 3868 CGATATTCTTCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 3809 >seq4076 Length=19007 Score = 84.2 bits (92), Expect = 4e-11 Identities = 262/401 (65%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 9887 TCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 9946 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| | ||| || || || | | |||||| || || ||||| | Sbjct 9947 GAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATG 10006 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||||| | | |||| || | || || || Sbjct 10007 TACTGGCACATGAGAGTCGCGTTCATGCCAAGAAGAGCGAC-GGGGAGAGCGTCCGTGAG 10065 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||||| ||| | | || ||||| | || || || | | | | Sbjct 10066 GAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACAGATTCGGGGCTGGG 10125 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGG--TGCAGACCCTCGTCG 251859 ||| || | | ||| |||| || | | || || || |||| ||||| ||| Sbjct 10126 CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAA--GTCGGTATGCATGCCCTCATCG 10183 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||||| ||| ||||| | | || |||||||| | ||||| ||| |||||||| Sbjct 10184 CGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAG 10243 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 || || | | || || || ||| | | ||||||||| Sbjct 10244 AAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 10284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027765949924580