Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2279 104 4e-17 seq1386 98.7 2e-15 >seq2279 Length=94676 Score = 104 bits (114), Expect = 4e-17 Identities = 666/1043 (64%), Gaps = 54/1043 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| ||||| ||||| || || ||| ||| || Sbjct 3278 CGCCACTGGATGTACTCGGAGGGGGTAGAGTCCAAGTGGTGGTCGATGTGGGCGAAGGCG 3337 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| || | | || ||| ||| || Sbjct 3338 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGGTGGTAGACCTCACCCGAAGTGGGG 3397 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || || ||||| |||| ||| |||| |||||| ||||| ||||||||||| Sbjct 3398 ATGAGC-TCACCAGTCAGGACGTTGACGAGAGTAGACTTGCCAGCACCGTTGGGGCCAAT 3456 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218 ||| |||| ||||| | || | | ||| || | | || | |||||| |||| Sbjct 3457 GACGGCAATACGGGA-GCCAAGAGAGCACTGGAAGGTGATGTCGG---AGATCTG-GGGC 3511 Query 225219 C---AGTTT----GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 || | |||| |||| || | | | | ||||| | ||||| Sbjct 3512 TTGGAGGTACCGGGGTACTGGAAGGTCATGTTGCTGACACGGACAATGGCCTTGGCCTTG 3571 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTC 225331 | | | |||||| ||||| |||||||||||||||| ||| || | | | | Sbjct 3572 GTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAACTTGAACTCCATCTCGGAGGCACCG 3631 Query 225332 AGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGG 225391 || ||||||||||| || || ||| ||||| | || | ||| || || Sbjct 3632 AGCTCGTAGTAAGACTTGGCGGAAGGAACCTTCTTGACGAACTCGGAGATGTTACCACGG 3691 Query 225392 TGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC-GTCAA 225449 | | ||||||||| | || |||| || | || ||| | | || ||| | Sbjct 3692 TAACGCTTGAGCTTGAAGCGCT---CGTAGTGGATAACGTGCTGG--ATGGTGTTGTCCA 3746 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGGT 225506 ||| ||||||||||| | |||||||| | || | | || | | ||||| Sbjct 3747 AGAACTTGGAGTCGTGGGAGATGATGATGGAGGTGCAAG---GAGAGTTGAC---GAGGT 3800 Query 225507 GCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | || | |||||| || ||||| |||||||||||||||| || || ||||| || || Sbjct 3801 AC-TGCTCGAGCCAAGCAACGTTCTTGACGTCCATGTGGTTGGTGGGCTCGTCGAGCAGA 3859 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | || || || ||| || | |||| ||||||||| ||||| || || Sbjct 3860 AGAATATCGGGCTCCTCGAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCA 3919 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTT-CGT-CAAAGCCGTACTCCAGGAGCG 225683 || || ||| ||| | | | | || ||| || | || ||| ||||| |||| Sbjct 3920 GAGAGCGAGGTGATGGGAGCCTCGAACT--GCTCGCGAACGAAACCGAACTCCTCGAGCT 3977 Query 225684 T---CTGGATAA-----TGCG-CTCGG-GAGAGCTGCGAGCGGCAACGTTGGGGTCGGAC 225733 | ||||| | || | || || || | | || ||| ||| || || | Sbjct 3978 TGTTCTGGACATCCTCCTGGGTCTTGGTGACACCAGC-AGCCTCAAGCTTCTTCATGGTC 4036 Query 225734 GAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTAC 225793 || ||| | ||||| || | | | | | ||| | |||||| || ||||| Sbjct 4037 CAGCC--AATGA----CGGTCTGCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCGACGTAG 4090 Query 225794 ACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGG 225853 || ||| || || || | |||||| ||||| ||||| | || || ||||| Sbjct 4091 ACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGC 4150 Query 225854 AGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTG 225913 | ||||| |||| || | |||||||| || | || ||||| | | || ||||| Sbjct 4151 ATGAGGGTGGTCTTACCGGAACCGTTGGGGCCCAGAAGACCGTAGCGGTGGCCACGCTTC 4210 Query 225914 ATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAA 225973 | ||| | || ||| || || |||||| |||| ||||| |||||||| ||| Sbjct 4211 AGACGCAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAG 4270 Query 225974 TCGCACAGGTCCTCACCCTCCTC 225996 | |||||| |||||||||||||| Sbjct 4271 TTGCACAGATCCTCACCCTCCTC 4293 >seq1386 Length=66401 Score = 98.7 bits (108), Expect = 2e-15 Identities = 282/431 (65%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 59091 AGTAGAGCATGCCGGACAGGAAGCAGGCCTTTTGGCGGAAGCTCAGATTGGACTTCCAGA 59150 |||| | |||||| |||| | || | || ||| ||| || ||||| |||||| Sbjct 35123 AGTACATCATGCCCGACAAATAACATACTTTCTGGATGAAAGAGAGCTTGGATCTCCAGA 35182 Query 59151 AGTGGGGGTTGGTGCACAGAGTCGTGGAACCCAGCGCCCAACGGTATTGCTGGCTGAAGA 59210 | | || || ||| |||||| |||||||||| ||| || ||||||| ||| | Sbjct 35183 ACTCTGGATTTGTGAGCAGAGTTGTGGAACCCATGCACCAGCGCATTTGCTGGGAGAAAA 35242 Query 59211 ACGACTTGAGCTCGTAGGGGCAAACTCCCTTGGCAAGGTTCAGGGGAATGTACTTGAGCT 59270 ||| | | | || ||||| || || ||||| ||| |||| ||||| || | Sbjct 35243 ACGCGCGGGGATTGTCAGGGCAGACGCCGGCAGCAAGACACAGAGGAACGTACTCGACCG 35302 Query 59271 TCCAGCCGTCGTCAACTACTGCAAAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAG 59330 |||| || |||||| | |||| || |||||||| || ||| | || ||||| | Sbjct 35303 TCCACCCACGGTCAACAGCCCCAAAACCAGTGTGGACATCTTCGGAATATCCGATCTCTG 35362 Query 59331 CAGTGCCGCCGAAAGGTACAAGCGCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACA 59390 |||||||||| | | || || || || ||||| || || | || ||||| | Sbjct 35363 CAGTGCCGCCCACCTCAGCCAGAGCTTCACGACGGTACACGGCATTGCTGCCCACGCAGA 35422 Query 59391 CGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGG 59450 | | | || || || ||| ||||| | | |||||||| || || || || Sbjct 35423 TCGAGGCCCCCCAGCGGTTGCGGTTGACCTGAACAACGCGGTAGAAAAGCTCTTGACAGG 35482 Query 59451 ATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGGGCGAACCTC-GAAGAACTGGGGGGTC 59509 || ||| | |||| ||||| || || || ||| || || ||||||||| || | | Sbjct 35483 CGCCGGCACCCTGCTCCACCCATGTGTGCTC-AGGCAAAGTTCGGAAGAACTGAGGAGAC 35541 Query 59510 TGCACAATCGC 59520 || || ||||| Sbjct 35542 TGGACGATCGC 35552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921560420893600