Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1094 284 1e-71 >seq1094 Length=88458 Score = 284 bits (314), Expect = 1e-71 Identities = 968/1482 (65%), Gaps = 36/1482 (2%) Strand=Plus/Plus Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 |||||||| || || || || ||| ||| || |||| || ||||| || ||| | || Sbjct 24896 CTGTTCAATGCTGGTACTCCCAAGCCTCAGTTGGCTTCTTGCTTCCTCATCGAC-ATGAA 24954 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || || ||| || || | ||||| ||| ||| |||||| | ||||| || Sbjct 24955 GGAGGATAGCATTGAGGGTATCTACGACACCCTGAAGACCTGTGCCATGATCTCCAAGAC 25014 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 ||| || || ||||| | | || ||| | | ||||||| || |||||| ||| Sbjct 25015 CGCCGGTGGTATCGGTCTGAACGTTCACCGCATCCGTGCCACTGGCAGCTACATTGCCGG 25074 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 ||| || |||||| |||||||||| ||||||||||||| || | ||||||| | || || Sbjct 25075 TACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCG 25134 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 |||||| |||||||||||| | | | ||| ||||||| |||| |||||||| || Sbjct 25135 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 25194 Query 94203 GCACGCGGACG--TGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 ||| || || | | || |||||| ||||||| || ||||||||||| || || || Sbjct 25195 GCATGCTGATGTCTTCA-GCTTTC-TCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTT 25252 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | ||||| ||||||||||||||| | || || || || ||||| || || ||| Sbjct 25253 CGCGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAG 25312 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 | ||| | |||||| || | || || || || || || || || ||||||| | | Sbjct 25313 CAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTAT 25372 Query 94381 GGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCAGGAAGGT 94439 || | || || | | | || | | || || | |||| | || | | || Sbjct 25373 GGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTC-GCGAGAC 25431 Query 94440 TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCC 94499 | | |||| |||||| ||| | |||| | || | ||||| || || |||| || Sbjct 25432 TGTCCGTGCTCAGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCC 25491 Query 94500 CTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGA 94558 || ||| |||| |||||| | ||| |||| |||| ||||||| || |||| || | Sbjct 25492 CTTCATGTTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCTTGGCACCA 25550 Query 94559 TCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTG 94618 | ||||| || |||||| ||| || |||||||| || |||| || || | |||| Sbjct 25551 TTCGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGAAGTCGCTG 25610 Query 94619 TGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA----GATGCCTACACGTCT 94674 |||| ||| | | || | || |||| ||||| ||| || | | |||| Sbjct 25611 TGTGCAACTTAGCGTCTCTGGCGCTACCCACCTTCGT-CGATGTCGAGG--AAGGTGTCT 25667 Query 94675 ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTG 94734 || |||| | || | ||| || ||| | || | | ||| ||| ||| Sbjct 25668 ACGACTTC-AAGAAGCTTCACGAGGTT----ACT---CAGG--TGCTTGTCAAGAATCTG 25717 Query 94735 AACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAG 94794 |||| | | || |||| ||| |||||| || || || || ||| ||| || Sbjct 25718 AACAAGATCATTGACATTAACCACTACCCAGTTCCAGAAGCCAGGAAGAGCAACATGCGT 25777 Query 94795 CATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTG 94854 || || || |||| | || ||| | ||| | || ||||| | | | ||| || Sbjct 25778 CACCGTCCTATCGCTGTTGGTGTCAACGGTCTTGCTGACGCTTTCCTTGCTCTTCGTATG 25837 Query 94855 CCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTAC 94914 || | ||| ||| || || | |||| | | || ||||| | || || || Sbjct 25838 CCGTTCGATTCTCCTGAGGCCAAGCAGCTGAACATTCAAATCTTCGAGACTATCTACCAC 25897 Query 94915 GGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTC 94974 | || | | || || | | |||| ||||||| || ||||| ||||| Sbjct 25898 GCTGCTCTCACTGCCTCGGTTGAGCTCGCCAAGAGGGACGGC---CCTTACGAAACGTTC 25954 Query 94975 CGCGGATCGCCCT-TGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTC 95033 | || ||||| | ||||| ||| | || | ||| | ||| | || ||| | Sbjct 25955 C-AGGGCAGCCCTGCGTCCCAGGGAATTCTGCAATATGACATGTGGAATAAGACCCCCAC 26013 Query 95034 GGGTCTGTACGACTGGGA-AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACG 95092 | || | |||||||| |||| | | || || || | | |||||| ||| Sbjct 26014 CGACCTCTGGGACTGGGACAGCTTGAAG-GCCGAGATTGCCCAGCACGGTACCCGCAACT 26072 Query 95093 CGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGT 95152 | |||| || || || |||||||| ||||| || ||||| || ||| ||| |||| Sbjct 26073 CCTTGCTCGTTGCTCCAATGCCCACTGCCTCGACCAGCCAGATTCTCGGCTTCAATGAGT 26132 Query 95153 CGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCG 95212 ||||| || | ||||| ||| | ||| | || || |||||||| ||||||| | Sbjct 26133 GTTTCGAGCCTTATACCTCAAACATCTACTCTCGCCGTGTCCTCGCCGGTGAATTCCAGG 26192 Query 95213 TCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTC 95271 | ||||| | ||||| |||||| | | | || || ||||| ||| || | Sbjct 26193 TTGTCAACCCGTGGCTCCTGAAGGACCTCGTTGAC-CTCGGACTGTGGTCTGATCAGATG 26251 Query 95272 AAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGAC 95331 ||||||| | | | |||||||||| | ||| | ||||| | || || || ||| Sbjct 26252 AAGAACCGCATCATTGCCTCCAACGGCTCTATTCAGCAGATCCCCAACATCCCAGATGAC 26311 Query 95332 ATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||||||||||||||||||||||| |||||| | | |||||| Sbjct 26312 ATCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGC 26353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494689929864800