Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4076 178 2e-39 seq1094 102 1e-16 >seq4076 Length=19007 Score = 178 bits (196), Expect = 2e-39 Identities = 339/496 (68%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||| | | || || |||||||| |||| ||||| Sbjct 9883 CTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTT 9942 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || ||| |||| || || ||| |||||| | ||| || || || || Sbjct 9943 GGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTC 10002 Query 159769 GATGTAGCTACACATCTGC-TCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 |||||| ||||| | || | ||| || || || || |||||||| || |||| Sbjct 10003 GATGTACTGGCACATGAGAGTCGC-GTTCATGCCAAGAAGAGCGACGGGGAGAGCGTCCG 10061 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 || ||||||||||| |||||||| || ||||| | |||| | ||| |||| | Sbjct 10062 TGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACAGATTCGGGGC 10121 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||||| | | || || | ||||| ||||| || |||||| |||| |||| Sbjct 10122 TGGGCTT---CGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCT 10178 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || |||||||||| ||| ||||| | | | || ||||||| |||||| |||| Sbjct 10179 CATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGA 10238 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||| ||||||| || |||| ||||| || ||||| ||||| |||||||| || || | Sbjct 10239 GCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 10298 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCT 160127 ||| | | | || | | ||| |||| | |||| | |||||| || |||| Sbjct 10299 TGAGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCT 10358 Query 160128 TCTTTGCGATGCACGG 160143 |||| ||||||||| Sbjct 10359 TCTTCTTGATGCACGG 10374 >seq1094 Length=88458 Score = 102 bits (112), Expect = 1e-16 Identities = 328/496 (66%), Gaps = 10/496 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || |||||||| |||| | || | || |||||| | | || ||||||||| Sbjct 26548 CTGGTCGACAGTGAACTGGATGG-GAGCAGCAGC-GGCCTGGGTGCGGAGGTAGTACATG 26491 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||||||| ||||| || ||| || | |||||| || | | |||| || || Sbjct 26490 CCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGCATCGAGGTGATCTTGCCCATCGTG 26431 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 ||||| |||||| || || || ||||| ||| |||||||| | | || || ||| Sbjct 26430 GGGTCCTTCATGTGGATATTGAGGGACTGCGATTGATCGATGAACGCACCACGGTCGGCG 26371 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | | ||||| ||| |||| |||||| || |||||| | | || || || | Sbjct 26370 GCCATCTGAACGATGGTGCGCTGGGAAAGCTCCCAGACGGTCTTGTAGAGCGCCT-TGAT 26312 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || | || | | | | | ||| || ||||||||| ||| || | | || Sbjct 26311 GTCATCTGGGATGT-TGGGGATCTGCTGAATAGAGCCGTTGGAGGCAATGATGCGGTTCT 26253 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTGATG 204193 || ||| || ||||| | || | | | | || ||| || || ||||||| Sbjct 26252 TCATCTGATCAGACCACA-GTCCGAGGTCAACGAGGTCCTTCAGGAGCCACGGGTTGACA 26194 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || |||| || || | || | | | | ||| ||| | || ||||| Sbjct 26193 ACCTGGAATTCACCGGCGAGGACACGGCGAGAGTAGATGTTTGAGGTATAAGGCTCGAAA 26134 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||| ||| ||||| |||||| ||| ||| |||||||| ||||| | ||||| | Sbjct 26133 CACTCATTGAAGCCGAGAATCTGGCTGGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAG 26074 Query 204314 GAGTTGCGCACACCGT 204329 |||||||| ||||| Sbjct 26073 GAGTTGCGGGTACCGT 26058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795101725812800