Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq4076 178 2e-39
seq1094 102 1e-16
>seq4076
Length=19007
Score = 178 bits (196), Expect = 2e-39
Identities = 339/496 (68%), Gaps = 5/496 (1%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| ||||| |||||||| | | || || |||||||| |||| |||||
Sbjct 9883 CTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTT 9942
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|| || ||| |||| || || ||| |||||| | ||| || || || ||
Sbjct 9943 GGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTC 10002
Query 159769 GATGTAGCTACACATCTGC-TCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827
|||||| ||||| | || | ||| || || || || |||||||| || ||||
Sbjct 10003 GATGTACTGGCACATGAGAGTCGC-GTTCATGCCAAGAAGAGCGACGGGGAGAGCGTCCG 10061
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
|| ||||||||||| |||||||| || ||||| | |||| | ||| |||| |
Sbjct 10062 TGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACAGATTCGGGGC 10121
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947
||||| | | || || | ||||| ||||| || |||||| |||| ||||
Sbjct 10122 TGGGCTT---CGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCT 10178
Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007
| || |||||||||| ||| ||||| | | | || ||||||| |||||| ||||
Sbjct 10179 CATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGA 10238
Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067
|||| ||||||| || |||| ||||| || ||||| ||||| |||||||| || || |
Sbjct 10239 GCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 10298
Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCT 160127
||| | | | || | | ||| |||| | |||| | |||||| || ||||
Sbjct 10299 TGAGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCT 10358
Query 160128 TCTTTGCGATGCACGG 160143
|||| |||||||||
Sbjct 10359 TCTTCTTGATGCACGG 10374
>seq1094
Length=88458
Score = 102 bits (112), Expect = 1e-16
Identities = 328/496 (66%), Gaps = 10/496 (2%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| ||| || |||||||| |||| | || | || |||||| | | || |||||||||
Sbjct 26548 CTGGTCGACAGTGAACTGGATGG-GAGCAGCAGC-GGCCTGGGTGCGGAGGTAGTACATG 26491
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|||||||| ||||| || ||| || | |||||| || | | |||| || ||
Sbjct 26490 CCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGCATCGAGGTGATCTTGCCCATCGTG 26431
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
||||| |||||| || || || ||||| ||| |||||||| | | || || |||
Sbjct 26430 GGGTCCTTCATGTGGATATTGAGGGACTGCGATTGATCGATGAACGCACCACGGTCGGCG 26371
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075
||||| | | ||||| ||| |||| |||||| || |||||| | | || || || |
Sbjct 26370 GCCATCTGAACGATGGTGCGCTGGGAAAGCTCCCAGACGGTCTTGTAGAGCGCCT-TGAT 26312
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134
|| | || | | | | | ||| || ||||||||| ||| || | | ||
Sbjct 26311 GTCATCTGGGATGT-TGGGGATCTGCTGAATAGAGCCGTTGGAGGCAATGATGCGGTTCT 26253
Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTGATG 204193
|| ||| || ||||| | || | | | | || ||| || || |||||||
Sbjct 26252 TCATCTGATCAGACCACA-GTCCGAGGTCAACGAGGTCCTTCAGGAGCCACGGGTTGACA 26194
Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253
| ||| || || |||| || || | || | | | | ||| ||| | || |||||
Sbjct 26193 ACCTGGAATTCACCGGCGAGGACACGGCGAGAGTAGATGTTTGAGGTATAAGGCTCGAAA 26134
Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313
||| ||| ||||| |||||| ||| ||| |||||||| ||||| | ||||| |
Sbjct 26133 CACTCATTGAAGCCGAGAATCTGGCTGGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAG 26074
Query 204314 GAGTTGCGCACACCGT 204329
|||||||| |||||
Sbjct 26073 GAGTTGCGGGTACCGT 26058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795101725812800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |