Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4076 259 5e-64 seq1227 95.1 1e-14 >seq4076 Length=19007 Score = 259 bits (286), Expect = 5e-64 Identities = 581/877 (66%), Gaps = 68/877 (8%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 9884 TTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 9943 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||| ||| || | ||| | || ||||| | ||| || ||||||||| Sbjct 9944 GTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCG 10003 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 ||||| || ||||| | |||| | | | || || ||| || || || || || || Sbjct 10004 ATGTACTGGCACATGAGAGTCGCGTTCATG-CCAAGAAGAGCGACGGGGAGAGCGTCCGT 10062 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 ||| || | |||||| |||| || ||||||| ||| | | ||| | | ||| Sbjct 10063 GAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACAGATTCGGGGCT 10122 Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 ||| || || ||| | ||||| || ||| || |||||| ||||| |||||| Sbjct 10123 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCA 10180 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | || ||||| || ||| ||||||||| || ||||||||||| || || |||||| Sbjct 10181 TCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGC 10240 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || |||| ||||||| ||| ||||||| |||||||||||||||||||| | Sbjct 10241 CAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATG 10300 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 |||||| |||| || | | ||| | |||||| || || ||||| |||||||| Sbjct 10301 AGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCTTC 10360 Query 133102 TCTTTGACGCACGG---------------------------------CATCG-------- 133120 | |||| |||||| ||||| Sbjct 10361 TTCTTGATGCACGGGACTATAGTACTTTAGCGATCCAAGCTTTGCATCATCGAGGCGGAT 10420 Query 133121 ------------TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166 | || |||||||| | ||| |||| | || || || ||| | Sbjct 10421 TGGGCTTACTGTTATCAATGGCGTTGA--AAAGATAGTTGCGCTGCCTGGGCTCGCTGAT 10478 Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||| || | || || || | ||||||||| || || || Sbjct 10479 GTATGTGTCGATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATAATCTGGAA 10538 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||||| ||||| || |||||| | ||| || || |||| ||| || ||||| || | Sbjct 10539 ACCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC-GGAGCTGAAGCGTTCGACGAGGT 10597 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| ||||||||||| |||||||| || || || ||||| |||||| || Sbjct 10598 TCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGC 10657 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||| | |||| | ||||||| | |||||||| || || | ||||| Sbjct 10658 GCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGATCAATCTCCT 10717 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 10718 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 10754 >seq1227 Length=46781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| || || | ||||||||| ||||| || Sbjct 32685 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 32744 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| |||| || || | ||||| Sbjct 32745 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 32804 Query 38457 CG 38458 || Sbjct 32805 CG 32806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139163379200