Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1288 268 1e-66 seq3143 116 5e-21 seq656 100 4e-16 >seq1288 Length=17335 Score = 268 bits (296), Expect = 1e-66 Identities = 548/809 (68%), Gaps = 14/809 (2%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 943 TCACCGGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 884 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || || || ||| Sbjct 883 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACCATCTTCTGGATCTTGGGG 824 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | ||||| || | || || || |||||||| | Sbjct 823 ATACGGGTGGAGCCACCAACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCA 764 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || |||||||| ||||| ||||| | |||| || || ||| Sbjct 763 TCACGGAGGACACGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 704 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||||| || ||||| |||| || ||| | | || || || Sbjct 703 TCGAAACGAGCACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATC 644 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || | || ||||| || ||||| || || || || Sbjct 643 TCGATGGAGGTCTGCGCAGAGCTGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 584 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | | || || || || || | || || || Sbjct 583 AGACGGCGGAGGGCGCGAGCGTTGGTAGTCAAGTCCTTTTTGTGCTTTCTCTTGAATTCG 524 Query 7430 TCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 | |||||| | || ||| | | || || || |||||||| | ||| || || Sbjct 523 TTGACGAAGTGGTTGACAAGGCGGTTG---TCAAAGTCCTCACCACCAAGGTGAGTGTCA 467 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| | ||||| || |||||||| | || || | | | ||| ||||| || Sbjct 466 CCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATAGTCAGGAGCGAGACATCGAAA 407 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATC 7602 ||||||||||| || || || || || ||||| || ||| | || ||||| || Sbjct 406 GTACCACCACCAAGATCGAAGATCAGGACGTTG----CGCTCGCCAGTGGCCTTCTTGTC 351 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 |||||||| |||||||| || || || || || || || ||||| || ||| ||||| Sbjct 350 AAGACCGTAGGCGATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCC 291 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||| | ||||| || || || || || || || ||||| |||||||| ||||| Sbjct 290 AGCAATGAGACCGGCATCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGAC 231 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || ||||| |||| |||| | |||||| || || || || | || |||| || Sbjct 230 AGTGACGACAGCGTTGTTGACGGTGCCACCGAGGTAAGACTCGGCAGTCTCCCTCATCTT 171 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||| || ||||| || |||||||| |||| Sbjct 170 GGTGAGGACCATGGAGGAAATCTCCTCAG 142 >seq3143 Length=89464 Score = 116 bits (128), Expect = 5e-21 Identities = 242/358 (68%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || ||||||| || |||| ||||| | |||||| |||||| | | |||| Sbjct 57416 TACCTTTCTTGGTCTTGCGTTGGAACTCCTTCTTGAAGTGGTCAAGGAGGTTGGTGTCGA 57475 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || | |||||| | ||| || || || ||||| || ||||| |||| ||| || | Sbjct 57476 AGTCCTGACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCGCCCT 57535 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 |||| | | || ||||| || ||||||||||| ||||| | || || |||||| Sbjct 57536 GGATGTGCAGAAGGGAGACATCGAAAGTACCACCACCAAGGTCGTAGATCAGGACGTTCC 57595 Query 7581 TATCGTCGTCTTTGTT--CTTATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || || | | | ||||||||| || || || || || || || || | Sbjct 57596 TCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGT 57655 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 |||| ||||| || ||| || || ||||| | | || || || || || || || | Sbjct 57656 TAATGATACGGAGGACGTTGAGCCCGGCAATGGCACCGGCGTCCTTGGTGGCCTGACGCT 57715 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 | ||||| |||||||||||||| || | ||| || | | || ||||| ||||| Sbjct 57716 GGTTGTCGTTGAAGTAGGCCGGGACAGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 57773 >seq656 Length=45863 Score = 100 bits (110), Expect = 4e-16 Identities = 233/345 (68%), Gaps = 11/345 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | || Sbjct 729 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACGCCC 788 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGA-- 7571 | || | | | | |||||||| || ||||||||||| || || | ||||| Sbjct 789 TCGTCGACAGTAAGAATGGAAACATCGAAAGTACCACCACCAAGATCGTAGACAATGATC 848 Query 7572 GTACGTTC-GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||||| || | ||| || ||||| || |||||||| || | ||| ||||| || Sbjct 849 TGGCGTTCAGTCTTGTCATC---CTTCTTGTCCAGACCGTAGGCCAGAGCGGCCGCGGTG 905 Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || || || | || || || |||| ||||| || ||||| || | || || || || || Sbjct 906 GGCTCGTTGACAACACGGAGGACA-TTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGC 964 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || | ||||| |||||||| || || || || || |||| | || || Sbjct 965 GGCTCTCTGAGCGTCGTTGAAGTAGGCGGGAACAGTGACAACGGCGTTCTGAACAGGCTC 1024 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 ||||| ||| || || | ||| ||||| ||| | |||||||| Sbjct 1025 GCCGAGGTACTGCTCGGCAACATCCTTCATCTTGCTCAGAACCAT 1069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635090087319200