Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1094 102 1e-16 seq4076 91.5 2e-13 seq2014 87.8 2e-12 >seq1094 Length=88458 Score = 102 bits (112), Expect = 1e-16 Identities = 299/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Minus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || || ||||| ||||| ||||| | | |||||||| | ||||| ||| Sbjct 25626 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 25567 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 25566 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 25507 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| | |||| |||| | || || || ||| | || ||| || || | ||| | | Sbjct 25506 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 25447 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 25446 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 25388 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 25387 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 25328 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| || || |||||| ||||||||||| || || |||||||| || | | || Sbjct 25327 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 25268 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 25267 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 25208 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || ||| || ||||| ||||| || |||| |||| || Sbjct 25207 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 25170 >seq4076 Length=19007 Score = 91.5 bits (100), Expect = 2e-13 Identities = 334/517 (65%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||| ||||| || | || ||||| ||||| Sbjct 9869 TAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATG 9928 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099 ||||| || || || ||| ||| | | | || | | | | || || Sbjct 9929 AAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACC------AGC 9982 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || || || | || |||| ||||||| | |||| | |||||| || | ||| Sbjct 9983 AGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAGAAGA 10042 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||||| |||||| || |||| | ||||| ||||| || ||||| | | ||| Sbjct 10043 GCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATC 10102 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAA 117278 | | || ||||| |||| || || | || | ||| ||| ||| || Sbjct 10103 TTCTCAACAGATTCGGGGCTGGG-CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAA 10161 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || || | |||||||| || || || || ||||| ||||| | || ||||| Sbjct 10162 GTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCAT 10221 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| |||| | | ||| || ||| ||||||||||||||| Sbjct 10222 GAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTC 10281 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATT 117457 || ||| || |||| |||||| ||||||| |||| |||| || | ||| Sbjct 10282 GACGGCCGCGAAAGCAATGAGGCGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAAC 10340 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 | ||||| | |||||||||| || || || || Sbjct 10341 GAAGGGCCCAGTCGGCCTTCTTCTTGATGCACGGGAC 10377 >seq2014 Length=35049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| || ||||| ||||| | ||| || || || | ||| || || || | || || Sbjct 32509 GCATCGATTTCATCGATGAAAATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAG 32451 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489 || || || || || ||| ||||| |||||||||||||| || | | || ||| Sbjct 32450 GTCACGGACTCTAGAGGGGCCGACACCCACAAACATCTCCACGAACTCGGAACCGCTAAC 32391 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | || ||| || || | ||||||||| ||| |||| ||||| | |||||||| | Sbjct 32390 GCT-GAAGAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGG 32332 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||| || ||| | ||| | |||||| || || || ||||| || Sbjct 32331 TACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACC 32286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589941123791200