Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4076 91.5 2e-13 seq1094 87.8 2e-12 seq2014 84.2 3e-11 >seq4076 Length=19007 Score = 91.5 bits (100), Expect = 2e-13 Identities = 334/517 (65%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCG 65066 || || || || |||||||||| | ||||| | ||| | || |||| |||| Sbjct 10377 GTCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCG 10318 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||||| |||||| |||| || ||| || ||||||||||||||| ||| || Sbjct 10317 A-CCTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTC 10259 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | |||| ||| | |||||||| || |||||||| || | ||||| || Sbjct 10258 TTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAA 10199 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG-A 65245 ||| || || || || |||||||| | || || || ||| ||| ||| | | Sbjct 10198 TGAGCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCA 10139 Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305 | | || || |||| ||||| || | | ||| | | ||||| || |||| Sbjct 10138 CATCAAGTCGAAG-CCCAGCCCCGAATCTGTTGAGAAGATCATCACCGAGGCTGTCGAGA 10080 Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365 | ||||| | |||| || |||||| ||||| ||| | || |||||| | Sbjct 10079 TCGAGAAGGAGTTCCTCACGGACGCTCTCCCCGTCGCTCTTCTTGGCATGAACGCGACTC 10020 Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCA 65424 |||| | ||||||| |||| || | || || || || || | | | | || Sbjct 10019 TCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCT------GGTGGCGCTGGGCA 9966 Query 65425 CCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479 | | | ||| ||| || || || ||||| ||||| ||||| || | | Sbjct 9965 ACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACG 9906 Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | ||||| |||||||| |||||||| ||||| ||||| Sbjct 9905 GCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 9869 >seq1094 Length=88458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 294/455 (65%), Gaps = 2/455 (0%) Strand=Plus/Plus Query 75600 TCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCA 75659 |||| ||||| | || || |||||||| ||| || | || || || | || | Sbjct 25173 TCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGA 25232 Query 75660 ACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719 |||| || | || |||| ||| | | || || || | | || |||||||| || | Sbjct 25233 ACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATC 25292 Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779 | ||||||||||| |||||| || || ||| | || | || || || || | Sbjct 25293 TCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCC 25352 Query 75780 CAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 | ||||| |||||| |||||||| || || ||||||||| ||||||| ||| Sbjct 25353 CTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGG 25412 Query 75840 AGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCA 75898 ||||| | | | |||||| || | | || | | ||| | || || ||| | | Sbjct 25413 AGGGTCGTGGTCGCGAGACTGT-CCGTGCTCAGAAGCTCTGGTACGCGATCCTCGAGGCC 25471 Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||| || || || | || | ||| | |||||||| || ||| ||||| ||| Sbjct 25472 CAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAAC 25531 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || ||||| | || || || ||||| || || ||| ||||| | |||||||| Sbjct 25532 CAGAAGAACCTTGGCACCATTCGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACC 25591 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053 | | ||||| ||||| ||||| || || || Sbjct 25592 GCTCCTGATGAAGTCGCTGTGTGCAACTTAGCGTC 25626 >seq2014 Length=35049 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/326 (67%), Gaps = 21/326 (6%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||| ||||| || || ||| ||||| | ||| || ||||| || ||||| | Sbjct 32286 GGTGCCAAAATCCCGCGTGGTGCCATTCTCTCAGGTCCTCCCGGTACCGGTAAGACGTTG 32345 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393 ||||| |||| || |||||||| | || || ||| || || | | || | | Sbjct 32346 CTCGCTAAGGCCACTGCCGGTGAATCTCAAGTGCCTTTCTTC-AGCGTTA-GCGGTTCCG 32403 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | || |||||||||||||| ||||| || || || || || || || || | || | Sbjct 32404 AGTTCGTGGAGATGTTTGTGGGTGTCGGCCCCTCTAGAGTCCGTGACCTTTTCGCAACAG 32463 Query 175454 CCCGCGAAAATCA-ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA----- 175507 | || ||| | || || || ||| | ||||| ||||| || ||||| | |||| Sbjct 32464 CGCG-GAAGAGCACCCCCTGCATTATTTTCATCGATGAAATCGATGCTATCGGCAAATCA 32522 Query 175508 --AGCAACGCAGCGC--TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAAT 175563 ||| | |||| || ||| ||| | || || ||||||||| || | || Sbjct 32523 AGAGCGAAGCAGAGCTTTGGCGGT------GGCAACGATGAGAGAGAAAGTACCCTGAAC 32576 Query 175564 CAACTACTCACCGAGATGGATGGCTT 175589 ||| | ||||| |||||||| || || Sbjct 32577 CAAATCCTCACGGAGATGGACGGTTT 32602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529480694400