Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq4076 91.5 2e-13
seq1094 87.8 2e-12
seq2014 84.2 3e-11
>seq4076
Length=19007
Score = 91.5 bits (100), Expect = 2e-13
Identities = 334/517 (65%), Gaps = 16/517 (3%)
Strand=Plus/Minus
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCG 65066
|| || || || |||||||||| | ||||| | ||| | || |||| ||||
Sbjct 10377 GTCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCG 10318
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
||||||| |||||| |||| || ||| || ||||||||||||||| ||| ||
Sbjct 10317 A-CCTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTC 10259
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
||| | | |||| ||| | |||||||| || |||||||| || | ||||| ||
Sbjct 10258 TTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAA 10199
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG-A 65245
||| || || || || |||||||| | || || || ||| ||| ||| | |
Sbjct 10198 TGAGCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCA 10139
Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305
| | || || |||| ||||| || | | ||| | | ||||| || ||||
Sbjct 10138 CATCAAGTCGAAG-CCCAGCCCCGAATCTGTTGAGAAGATCATCACCGAGGCTGTCGAGA 10080
Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365
| ||||| | |||| || |||||| ||||| ||| | || |||||| |
Sbjct 10079 TCGAGAAGGAGTTCCTCACGGACGCTCTCCCCGTCGCTCTTCTTGGCATGAACGCGACTC 10020
Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCA 65424
|||| | ||||||| |||| || | || || || || || | | | | ||
Sbjct 10019 TCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCT------GGTGGCGCTGGGCA 9966
Query 65425 CCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATG 65479
| | | ||| ||| || || || ||||| ||||| ||||| || | |
Sbjct 9965 ACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACG 9906
Query 65480 GGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
| ||||| |||||||| |||||||| ||||| |||||
Sbjct 9905 GCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 9869
>seq1094
Length=88458
Score = 87.8 bits (96), Expect = 2e-12
Identities = 294/455 (65%), Gaps = 2/455 (0%)
Strand=Plus/Plus
Query 75600 TCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCA 75659
|||| ||||| | || || |||||||| ||| || | || || || | || |
Sbjct 25173 TCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGA 25232
Query 75660 ACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719
|||| || | || |||| ||| | | || || || | | || |||||||| || |
Sbjct 25233 ACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATC 25292
Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779
| ||||||||||| |||||| || || ||| | || | || || || || |
Sbjct 25293 TCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCC 25352
Query 75780 CAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839
| ||||| |||||| |||||||| || || ||||||||| ||||||| |||
Sbjct 25353 CTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGG 25412
Query 75840 AGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCA 75898
||||| | | | |||||| || | | || | | ||| | || || ||| | |
Sbjct 25413 AGGGTCGTGGTCGCGAGACTGT-CCGTGCTCAGAAGCTCTGGTACGCGATCCTCGAGGCC 25471
Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958
||| || || || | || | ||| | |||||||| || ||| ||||| |||
Sbjct 25472 CAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAAC 25531
Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018
|| ||||| | || || || ||||| || || ||| ||||| | ||||||||
Sbjct 25532 CAGAAGAACCTTGGCACCATTCGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACC 25591
Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053
| | ||||| ||||| ||||| || || ||
Sbjct 25592 GCTCCTGATGAAGTCGCTGTGTGCAACTTAGCGTC 25626
>seq2014
Length=35049
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/326 (67%), Gaps = 21/326 (6%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|||||||| ||||| || || ||| ||||| | ||| || ||||| || ||||| |
Sbjct 32286 GGTGCCAAAATCCCGCGTGGTGCCATTCTCTCAGGTCCTCCCGGTACCGGTAAGACGTTG 32345
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393
||||| |||| || |||||||| | || || ||| || || | | || | |
Sbjct 32346 CTCGCTAAGGCCACTGCCGGTGAATCTCAAGTGCCTTTCTTC-AGCGTTA-GCGGTTCCG 32403
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| || |||||||||||||| ||||| || || || || || || || || | || |
Sbjct 32404 AGTTCGTGGAGATGTTTGTGGGTGTCGGCCCCTCTAGAGTCCGTGACCTTTTCGCAACAG 32463
Query 175454 CCCGCGAAAATCA-ACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA----- 175507
| || ||| | || || || ||| | ||||| ||||| || ||||| | ||||
Sbjct 32464 CGCG-GAAGAGCACCCCCTGCATTATTTTCATCGATGAAATCGATGCTATCGGCAAATCA 32522
Query 175508 --AGCAACGCAGCGC--TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAAT 175563
||| | |||| || ||| ||| | || || ||||||||| || | ||
Sbjct 32523 AGAGCGAAGCAGAGCTTTGGCGGT------GGCAACGATGAGAGAGAAAGTACCCTGAAC 32576
Query 175564 CAACTACTCACCGAGATGGATGGCTT 175589
||| | ||||| |||||||| || ||
Sbjct 32577 CAAATCCTCACGGAGATGGACGGTTT 32602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596529480694400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |