Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1288 414 1e-110 seq656 120 4e-22 seq3143 114 2e-20 seq3277 89.7 7e-13 >seq1288 Length=17335 Score = 414 bits (458), Expect = 1e-110 Identities = 849/1258 (67%), Gaps = 17/1258 (1%) Strand=Plus/Plus Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||| || || ||||| || ||||| | | ||||||| ||||||||| || |||| | Sbjct 139 CTCCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACC 198 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 | ||| || || || | || || || ||||| || || ||||||| || || || | Sbjct 199 TCGGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGC 258 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | ||||| || ||||| || | | ||||| || || ||| || | || ||||| | Sbjct 259 GTCAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACG 318 Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGAC---GAAGATAAAA 195866 | || || || ||||| || || || ||||| |||||||| || | | || | Sbjct 319 AGCCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAA---GGCCACTGGCGAGCGCA 375 Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG 195926 | || ||||||| ||||| ||||||||||| || |||||||| || || | ||| || | Sbjct 376 ACGTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGG 435 Query 195927 GTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCG 195986 ||||| ||||| || ||| | || || ||||| ||||| || |||||||| || || | Sbjct 436 AGGGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTG 495 Query 195987 ATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 | || ||| || || || ||| | || ||| ||||| | || || || | Sbjct 496 ACAACCGCCTTGTCAACCACTTCGTC-AACGAATTCAAGAGAAAGCACAAAAAGGACTTG 554 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 || || || | || || || || || | ||||| || || |||||||| || || Sbjct 555 ACTACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACC 614 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || || | || || || | ||||| || || |||| || || ||||||||| Sbjct 615 CTGTCCAGCTCTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTC 674 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || || | || |||||||| ||||| || ||| | | || | || | Sbjct 675 TACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACC 734 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 ||||| ||||| || | || || ||||| || ||||| || ||||| || | || Sbjct 735 ATGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCGTCCACGAG 794 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 || ||||| || || || || |||||||| || ||||| || ||||| |||| |||| Sbjct 795 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 854 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCG 196405 ||||| || || ||||| | |||||||| ||||| || ||||| || ||||| Sbjct 855 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 914 Query 196406 GCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT------AATAACGTCCAAGATCTT 196459 ||||| ||||| ||||| || || || ||||| | || | | | || || Sbjct 915 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 971 Query 196460 CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 ||||| || ||||| || || | ||||| ||| | || || || |||||||| |||||| Sbjct 972 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 1031 Query 196520 AAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTAT 196579 | || | | ||||| || ||||| || |||||| | ||||| || || | Sbjct 1032 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 1091 Query 196580 TCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAG 196639 ||| || || || ||||| | ||| || || | || || || || | || | ||| Sbjct 1092 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 1151 Query 196640 GATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTT 196699 || ||| | || || || | ||||| | || || ||||| | || ||| | |||||| Sbjct 1152 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 1211 Query 196700 CCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAG 196759 || ||||| | || |||||| | || || || || || | |||||| | ||| Sbjct 1212 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCTCTC 1271 Query 196760 GACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCT 196819 || |||| ||||||| | | ||||| || |||||||| |||||||| || || || Sbjct 1272 GAGAAGGGCACTGGCAAGACCAACAAGATCGTCATTACCAACGACAAGGGCCGTCTGTCC 1331 Query 196820 AAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 |||||||| || || |||||| || || || || ||||||| || || || |||| Sbjct 1332 AAGGAGGAGATCGAGCGTATGCTTGCTGAGGCCGAGAAGTACAAGGCCGAGGATGAGG 1389 >seq656 Length=45863 Score = 120 bits (132), Expect = 4e-22 Identities = 201/284 (71%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||||| ||||| || || ||||||| || | || || || || |||||||| Sbjct 1009 GCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCTCAGAGAGCCGCTACCAAGGACGCC 950 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | | ||||| ||||| || |||| | | || |||| || || || ||||| || | Sbjct 949 GGTACCATTGCCGGTCTGAA-TGTCCTCCGTGTTGTCAACGAGCCCACCGCGGCCGCTCT 891 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAA----ATGT-ATTGATCTTTGAT 195883 || || |||||||||||||| | ||| |||| || | | |||| ||| ||| Sbjct 890 GGCCTACGGTCTGGACAAGAAGGATGAC-AAGACTGAACGCCAGATCATTG-TCTACGAT 833 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 || ||||||||||| || ||||| || |||| | | | || | || | ||||| || Sbjct 832 CTTGGTGGTGGTACTTTCGATGTTTCCATTCTTACTGTCGACGAGGGCGTTTTCGAGGTC 773 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||| |||||||| ||||| || |||||||| || || || Sbjct 772 CAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGA 729 >seq3143 Length=89464 Score = 114 bits (126), Expect = 2e-20 Identities = 189/272 (69%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || ||||| || |||||||| | ||| ||| Sbjct 57743 ACTGTCCCGGCCTACTTCAACGACAACCAGCGTCAGGCCACCAAGGACGCCGGTGCCATT 57684 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | || || || || || || || || || ||||| || ||| Sbjct 57683 GCCGGGCTCAACGTCCTCCGTATCATTAACGAGCCTACTGCCGCCGCCATTGCCTACGGT 57624 Query 195839 CTGGACAAGAACAAGGACGAA---GATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | |||| ||| || | || || |||||| || || ||||||||| Sbjct 57623 CTCGGCTCCGGCAAGTCCGAGAAGGAGAGGAACGTCCTGATCTACGACCTTGGTGGTGGT 57564 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| ||||| | || | || ||| | ||| || ||||| || ||| Sbjct 57563 ACTTTCGATGTCTCCCTTCTGCACATCCAGGGCGGTGTCTTCACTGTCAAGGCCACCGCT 57504 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| ||||| || |||||| | || ||||| Sbjct 57503 GGTGACACTCACCTTGGTGGTCAGGACTTCGA 57472 >seq3277 Length=56197 Score = 89.7 bits (98), Expect = 7e-13 Identities = 218/328 (66%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || |||| | | || || | ||| || | || || || ||| Sbjct 53538 AAGATGAAGGAGACCGCCGAGTCTTACCTTGGCAAGAATGTCAAGAACGCCGTCGTCACT 53597 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || ||||| || ||||| || | | || | Sbjct 53598 GTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCCGGTCAGATCTCT 53657 Query 195782 GGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || || ||| || | || |||| || || || || || || | || || ||||| Sbjct 53658 GGCCTGAA-TGTCCTCCGTGTTGTCAACGAGCCCACGGCTGCCGCTCTCGCCTACGGTCT 53716 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 || ||| | ||||| | | || ||| |||||| ||||||||||| || Sbjct 53717 TGAGAAGGAGCAGGACCGCGTCATTGCTG------TCTATGATCTTGGTGGTGGTACTTT 53770 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||| | || |||| | || | || | ||||| || ||| | || ||||| Sbjct 53771 CGATATTTCCATTCTTGAGATCCAGAACGGCGTCTTCGAGGTCAAGTCCACCAACGGTGA 53830 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||||| || ||||| || || |||||| Sbjct 53831 CACTCACCTCGGTGGCGAGGACTTCGAT 53858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657818158753600