Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2903 138 3e-27 seq1545 96.9 1e-14 >seq2903 Length=84294 Score = 138 bits (152), Expect = 3e-27 Identities = 198/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||| || | | ||||| || |||||| ||||| || ||||| | || || Sbjct 5764 CATAACGTCCTCAAGAGCCTTGACTAGACGACGTTGAATGTATCCAGTCTCGGCAGTCTT 5705 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || ||||| |||||||| |||| || |||||||| | ||| || Sbjct 5704 GACAGCAGTATCGATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCCGAGGG 5645 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| || | | ||||| ||| ||||| || | ||| ||||||| | |||| Sbjct 5644 AGTTAGACCACGCAGGTAGGAGTTCTGGACGAATCCTCTAGCCGCGGGCGAGTAGTCGTC 5585 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| |||||||| |||| |||| || || | ||| |||| |||||||| || ||||| Sbjct 5584 CTTTGTAAAGTGCGGCAAAGTCCGGTACTTGAATCCGAATGGAATACGCTTACCCTCAAC 5525 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | ||| || || | || | ||||||||||||| || Sbjct 5524 GGACTGTTGACCGACAAGCGCAGTCATCTGCGAAATGTT 5486 >seq1545 Length=114843 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||||||| ||||| ||||| |||| ||||| | || Sbjct 51776 TGAGCAATCGTCATACGAGAGGGAATAGCGTGGGGGTTGATAATGAGATCGGGAGTAAGA 51717 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || ||| ||||||||||||||||| | | || | | ||||| || |||||||| Sbjct 51716 CCCTCACGAGTGAAGGGCATATCCTCAT-GGCGGTAGGTAATACCAATGGTACCCTTTTG 51658 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| |||||||| || || Sbjct 51657 ACCGTGACGAGAAGCAAACTTATCTCCGAT 51628 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 ||||| | ||| ||||| || | || | || || |||| |||| | ||||||| Sbjct 52184 TGGACACGGTACGCATCCGAGACTTCGAACAGACGCTCCTTCAAGAAGGCACTTGCACCG 52125 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 ||||| |||||||||||||| ||||| || ||||| || || |||||||| | || | | Sbjct 52124 TGTGAGATCATACAATCACGTTCCATCTCTCCGAACCGCAGGCCACCATCTCTGGCACGA 52065 Query 251551 CCCTCGGCAGGCTGACGAGTGAG 251573 || ||| ||||||| || ||||| Sbjct 52064 CCTTCGACAGGCTGGCGGGTGAG 52042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471716145773060