Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5107 181 1e-39 seq4076 172 7e-37 seq3275 147 3e-29 seq1622 116 5e-20 seq1581 116 5e-20 seq110 114 2e-19 seq1094 102 1e-15 >seq5107 Length=15001 Score = 181 bits (200), Expect = 1e-39 Identities = 343/498 (69%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 ||| | ||| || ||||| ||||| || ||||||||||| | || || || |||| Sbjct 13634 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 13575 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277 |||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | || Sbjct 13574 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 13515 Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333 | |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| | Sbjct 13514 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 13457 Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393 || || ||||| | | |||| | | |||||||||| |||| |||| Sbjct 13456 ---AGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 13400 Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453 ||||| || | | | | || |||||||| | || |||| | ||||| | ||| | Sbjct 13399 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 13340 Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513 || | | |||| | ||| || || |||| ||| |||||||||| |||| Sbjct 13339 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 13280 Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573 || | ||||| | ||||||||||| ||||||||||||| || || | || | ||| Sbjct 13279 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 13220 Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633 | || ||||| |||||||| |||||| |||| |||| ||| || ||||| || || Sbjct 13219 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 13160 Query 1852634 ATCAGGGGGCGCTCGGCC 1852651 | || || |||||| || Sbjct 13159 TTGAGCGGACGCTCGCCC 13142 >seq4076 Length=19007 Score = 172 bits (190), Expect = 7e-37 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| |||||| ||||| |||||||| | ||||||||| Sbjct 9859 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 9918 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| || ||||||| ||| | | || |||| | | Sbjct 9919 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 9978 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||||||||| || || ||||||||||||||||||||||| ||||||||||| | Sbjct 9979 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 10038 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || || || || | || | | ||||| |||||||||||||| |||||| ||| Sbjct 10039 AAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 10098 Query 868930 GATCT 868934 ||||| Sbjct 10099 GATCT 10103 Score = 109 bits (120), Expect = 7e-18 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || |||||||| ||||| ||| | |||| | | ||| Sbjct 10510 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 10569 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| |||||||||||| |||||||| Sbjct 10570 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 10629 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 ||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| | Sbjct 10630 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 10689 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | |||||| || ||||||| || ||||||||||| ||| Sbjct 10690 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 10749 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 10750 TACATCTGCCA 10760 Score = 87.8 bits (96), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 9/156 (6%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||||||||| |||||||||||||| || |||| | |||| ||| ||| ||| Sbjct 10214 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 10273 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||||||||| || || | ||||| ||| || ||| |||||| | |||| Sbjct 10274 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 10327 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | |||||| | |||||||||||||| ||| Sbjct 10328 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 10363 >seq3275 Length=64463 Score = 147 bits (162), Expect = 3e-29 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||||||||| ||| | || |||||| |||| |||||| ||||||||||| Sbjct 53084 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 53143 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| ||||| |||||||||||||| || |||||| || Sbjct 53144 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 53194 >seq1622 Length=53468 Score = 116 bits (128), Expect = 5e-20 Identities = 141/190 (74%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 25339 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 25280 Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084 ||||||||||||| | ||| ||| || ||| | || | |||| | | ||| || Sbjct 25279 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 25223 Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 |||| || | || |||||| ||| |||||||||| ||| || || || || || | Sbjct 25222 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 25163 Query 1727145 CCAGCAGCCG 1727154 ||||||| || Sbjct 25162 CCAGCAGACG 25153 >seq1581 Length=33708 Score = 116 bits (128), Expect = 5e-20 Identities = 254/370 (69%), Gaps = 9/370 (2%) Strand=Plus/Minus Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732 |||| ||| ||||| || | |||||| | |||||||| || || || | | | Sbjct 30113 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 30055 Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||| |||||||||| || | | ||| | || |||| |||||||||| Sbjct 30054 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 29995 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 | |||||||||||| ||||||||||| | |||||| | | |||||| || | || Sbjct 29994 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 29935 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910 | ||| | | | | || | |||| ||| | |||| || | | ||| || | | Sbjct 29934 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 29880 Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970 | ||| |||| | |||||| | || || | | | | | || ||||| Sbjct 29879 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 29820 Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030 |||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||| Sbjct 29819 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 29760 Query 1727031 CGCGCATGAC 1727040 ||||||| || Sbjct 29759 CGCGCATCAC 29750 Score = 100 bits (110), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100 |||||||||| |||||||| ||| || |||||| | ||||| || | ||||| Sbjct 26210 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 26155 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || |||||||||||||||||| | || || ||| ||||| ||||||||| || || Sbjct 26154 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 26095 Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184 || ||||| || || ||||||||| Sbjct 26094 GCGACCAAAGGGTTTGAGATTGGC 26071 Score = 96.9 bits (106), Expect = 4e-14 Identities = 203/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178 |||||| ||| ||| ||||||| || ||| || | | || ||||| | || || | Sbjct 26891 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 26833 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 |||| || || || ||||| || || || |||| | ||||||| ||||| ||| Sbjct 26832 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 26773 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 || |||||| |||||||||||||||||| |||| |||| || ||| |||| ||| Sbjct 26772 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACGCCTATCG 26713 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355 |||| |||| || ||||||| |||| |||||| | ||| | | || Sbjct 26712 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 26653 Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 || || |||| ||||| || | || ||| ||| || |||||| |||||||| Sbjct 26652 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 26594 >seq110 Length=130031 Score = 114 bits (126), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || || ||||||||| ||| | ||| || ||||| |||||||| || ||| | Sbjct 60797 CAGCTATGGCGAGTCACACTGCCTCTCCGTTGGTTGCATTGTCGACGGCTGCCCTCCGGG 60856 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 ||||| || | ||||||||||||||||| ||| || || || || ||||||||| | Sbjct 60857 CATGCAGCTCACTGAGGCCGACATCCAGCCCCAGATGACCCGCCGTCGGCCGGGCCAGAG 60916 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 |||| | |||| || ||||||||| ||||| || ||||| || ||||| ||| Sbjct 60917 CGCAATCACCACACCTCGCAACGAGAAGGATCGTGTGGAAATCCAATCCGGCACCGAGTT 60976 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 ||| ||||||| || ||||| | ||| Sbjct 60977 TGGCGTCACGCTGGGAACGCCCATTGGC 61004 Score = 104 bits (114), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || || ||||| || ||||| |||| || ||| || || ||||| | || ||||| Sbjct 61477 GAAGATAGCATTGGGGGCACTGTGAGCTGTGTGATCCGTAATGTGCCATCTGGTCTCGGT 61536 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| | ||||| ||| || || |||||||| ||||||||| Sbjct 61537 GAGCCTTGCTTCGACAAGCTTGAGGCAATGCTTGCGCATGCCATGCTCAGTATCCCGGCC 61596 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201 || ||||| |||||||||||| || ||| |||| ||| Sbjct 61597 ACGAAGGGCTTCGAGATTGGCTCAGGTTTTGGCGGTTGC 61635 >seq1094 Length=88458 Score = 102 bits (112), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| | || |||||||| || | |||||||||| Sbjct 25147 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 25088 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| || || || | |||| ||| | ||| || | ||| || | || Sbjct 25087 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 25028 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | || || || || ||||||||||| ||||| Sbjct 25027 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 24968 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || || |||||||||| | ||| ||||| || Sbjct 24967 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 24932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106697692005460