Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5107 181 1e-39
seq4076 172 7e-37
seq3275 147 3e-29
seq1622 116 5e-20
seq1581 116 5e-20
seq110 114 2e-19
seq1094 102 1e-15
>seq5107
Length=15001
Score = 181 bits (200), Expect = 1e-39
Identities = 343/498 (69%), Gaps = 10/498 (2%)
Strand=Plus/Minus
Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218
||| | ||| || ||||| ||||| || ||||||||||| | || || || ||||
Sbjct 13634 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 13575
Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277
|||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | ||
Sbjct 13574 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 13515
Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333
| |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| |
Sbjct 13514 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 13457
Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393
|| || ||||| | | |||| | | |||||||||| |||| ||||
Sbjct 13456 ---AGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 13400
Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453
||||| || | | | | || |||||||| | || |||| | ||||| | ||| |
Sbjct 13399 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 13340
Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513
|| | | |||| | ||| || || |||| ||| |||||||||| ||||
Sbjct 13339 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 13280
Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573
|| | ||||| | ||||||||||| ||||||||||||| || || | || | |||
Sbjct 13279 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 13220
Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633
| || ||||| |||||||| |||||| |||| |||| ||| || ||||| || ||
Sbjct 13219 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 13160
Query 1852634 ATCAGGGGGCGCTCGGCC 1852651
| || || |||||| ||
Sbjct 13159 TTGAGCGGACGCTCGCCC 13142
>seq4076
Length=19007
Score = 172 bits (190), Expect = 7e-37
Identities = 185/245 (76%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| || || |||||| |||||| ||||| |||||||| | |||||||||
Sbjct 9859 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 9918
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||| | ||| ||||||| || ||||||| ||| | | || |||| | |
Sbjct 9919 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 9978
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
||||||||||| || || ||||||||||||||||||||||| ||||||||||| |
Sbjct 9979 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 10038
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| || || || || | || | | ||||| |||||||||||||| |||||| |||
Sbjct 10039 AAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 10098
Query 868930 GATCT 868934
|||||
Sbjct 10099 GATCT 10103
Score = 109 bits (120), Expect = 7e-18
Identities = 175/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||||||||| || |||||||| ||||| ||| | |||| | | |||
Sbjct 10510 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 10569
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| |||||||||||| ||||||||
Sbjct 10570 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 10629
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| |
Sbjct 10630 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 10689
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|| | || || | |||||| || ||||||| || ||||||||||| |||
Sbjct 10690 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 10749
Query 869870 TACATCTCCCA 869880
||||||| |||
Sbjct 10750 TACATCTGCCA 10760
Score = 87.8 bits (96), Expect = 2e-11
Identities = 114/156 (73%), Gaps = 9/156 (6%)
Strand=Plus/Plus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||||||||| |||||||||||||| || |||| | |||| ||| ||| |||
Sbjct 10214 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 10273
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||||||||| || || | ||||| ||| || ||| |||||| | ||||
Sbjct 10274 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 10327
Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371
| |||||| | |||||||||||||| |||
Sbjct 10328 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 10363
>seq3275
Length=64463
Score = 147 bits (162), Expect = 3e-29
Identities = 99/111 (89%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|||||||||||||||||||| ||| | || |||||| |||| |||||| |||||||||||
Sbjct 53084 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 53143
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 53144 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 53194
>seq1622
Length=53468
Score = 116 bits (128), Expect = 5e-20
Identities = 141/190 (74%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 25339 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 25280
Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084
||||||||||||| | ||| ||| || ||| | || | |||| | | ||| ||
Sbjct 25279 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 25223
Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144
|||| || | || |||||| ||| |||||||||| ||| || || || || || |
Sbjct 25222 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 25163
Query 1727145 CCAGCAGCCG 1727154
||||||| ||
Sbjct 25162 CCAGCAGACG 25153
>seq1581
Length=33708
Score = 116 bits (128), Expect = 5e-20
Identities = 254/370 (69%), Gaps = 9/370 (2%)
Strand=Plus/Minus
Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732
|||| ||| ||||| || | |||||| | |||||||| || || || | | |
Sbjct 30113 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 30055
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792
|||||||||||||| |||||||||| || | | ||| | || |||| ||||||||||
Sbjct 30054 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 29995
Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851
| |||||||||||| ||||||||||| | |||||| | | |||||| || | ||
Sbjct 29994 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 29935
Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910
| ||| | | | | || | |||| ||| | |||| || | | ||| || | |
Sbjct 29934 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 29880
Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970
| ||| |||| | |||||| | || || | | | | | || |||||
Sbjct 29879 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 29820
Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030
|||||||||| || ||||||||||| |||||||| || | ||||| |||| |||||
Sbjct 29819 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 29760
Query 1727031 CGCGCATGAC 1727040
||||||| ||
Sbjct 29759 CGCGCATCAC 29750
Score = 100 bits (110), Expect = 3e-15
Identities = 109/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100
|||||||||| |||||||| ||| || |||||| | ||||| || | |||||
Sbjct 26210 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 26155
Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160
|| |||||||||||||||||| | || || ||| ||||| ||||||||| || ||
Sbjct 26154 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 26095
Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184
|| ||||| || || |||||||||
Sbjct 26094 GCGACCAAAGGGTTTGAGATTGGC 26071
Score = 96.9 bits (106), Expect = 4e-14
Identities = 203/299 (68%), Gaps = 8/299 (3%)
Strand=Plus/Minus
Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178
|||||| ||| ||| ||||||| || ||| || | | || ||||| | || || |
Sbjct 26891 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 26833
Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238
|||| || || || ||||| || || || |||| | ||||||| ||||| |||
Sbjct 26832 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 26773
Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298
|| |||||| |||||||||||||||||| |||| |||| || ||| |||| |||
Sbjct 26772 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACGCCTATCG 26713
Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355
|||| |||| || ||||||| |||| |||||| | ||| | | ||
Sbjct 26712 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 26653
Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411
|| || |||| ||||| || | || ||| ||| || |||||| ||||||||
Sbjct 26652 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 26594
>seq110
Length=130031
Score = 114 bits (126), Expect = 2e-19
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152
|| || ||||||||| ||| | ||| || ||||| |||||||| || ||| |
Sbjct 60797 CAGCTATGGCGAGTCACACTGCCTCTCCGTTGGTTGCATTGTCGACGGCTGCCCTCCGGG 60856
Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212
||||| || | ||||||||||||||||| ||| || || || || ||||||||| |
Sbjct 60857 CATGCAGCTCACTGAGGCCGACATCCAGCCCCAGATGACCCGCCGTCGGCCGGGCCAGAG 60916
Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272
|||| | |||| || ||||||||| ||||| || ||||| || ||||| |||
Sbjct 60917 CGCAATCACCACACCTCGCAACGAGAAGGATCGTGTGGAAATCCAATCCGGCACCGAGTT 60976
Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGC 18300
||| ||||||| || ||||| | |||
Sbjct 60977 TGGCGTCACGCTGGGAACGCCCATTGGC 61004
Score = 104 bits (114), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| || ||||| || ||||| |||| || ||| || || ||||| | || |||||
Sbjct 61477 GAAGATAGCATTGGGGGCACTGTGAGCTGTGTGATCCGTAATGTGCCATCTGGTCTCGGT 61536
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| | ||||| ||| || || |||||||| |||||||||
Sbjct 61537 GAGCCTTGCTTCGACAAGCTTGAGGCAATGCTTGCGCATGCCATGCTCAGTATCCCGGCC 61596
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201
|| ||||| |||||||||||| || ||| |||| |||
Sbjct 61597 ACGAAGGGCTTCGAGATTGGCTCAGGTTTTGGCGGTTGC 61635
>seq1094
Length=88458
Score = 102 bits (112), Expect = 1e-15
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| | || |||||||| || | ||||||||||
Sbjct 25147 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 25088
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| || || || | |||| ||| | ||| || | ||| || | ||
Sbjct 25087 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 25028
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || ||||| | ||||||||| | || || || || ||||||||||| |||||
Sbjct 25027 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 24968
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280
|| || |||||||||| | ||| ||||| ||
Sbjct 24967 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 24932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106697692005460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |