Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq5107 196 8e-44
seq4076 185 1e-40
seq3275 129 9e-24
seq1581 114 2e-19
seq1622 87.8 3e-11
>seq5107
Length=15001
Score = 196 bits (216), Expect = 8e-44
Identities = 348/498 (70%), Gaps = 10/498 (2%)
Strand=Plus/Minus
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
||| | ||| |||||||| ||||| || ||||||||||| | || || || ||||
Sbjct 13634 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 13575
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620
|||||||||||||||||||||||| ||||||| ||| | || |||| ||| | ||
Sbjct 13574 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 13515
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677
| |||||| |||| ||| | ||| || ||| ||||| || ||||| | | ||
Sbjct 13514 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 13459
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| |
Sbjct 13458 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACGA 13399
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || ||||| || | || ||||| | | || |||| | ||||| | ||| ||
Sbjct 13398 ACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 13339
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | |||| | |||||| || |||| ||| ||||||||| |||||
Sbjct 13338 AATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 13279
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | ||||| | |||||| | || |||| |||||||| || || | || | || |
Sbjct 13278 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 13219
Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976
|| ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || ||
Sbjct 13218 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 13160
Query 2411977 CAGAGAGGGCGCTCGGCC 2411994
||| || |||||| ||
Sbjct 13159 TTGAGCGGACGCTCGCCC 13142
>seq4076
Length=19007
Score = 185 bits (204), Expect = 1e-40
Identities = 192/252 (76%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| |||||||| || || || |||||| |||||| ||||| |||||||| | ||
Sbjct 9852 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 9911
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| || ||||| ||||| | || |
Sbjct 9912 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 9971
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| | | ||||||||||| || ||||| || ||||||||||||||||| | |||||||
Sbjct 9972 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 10031
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || ||||| || | || ||| ||||| |||||||||||||| ||||
Sbjct 10032 TGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 10091
Query 794131 CGATGATGATCT 794142
|| |||||||||
Sbjct 10092 CGGTGATGATCT 10103
>seq3275
Length=64463
Score = 129 bits (142), Expect = 9e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|||||||||||||||||||| ||| | || |||||| | || |||||||| |||||||||
Sbjct 53084 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 53143
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757
| |||||||||||||| ||||| || ||||||||||| || |||||| ||
Sbjct 53144 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 53194
>seq1581
Length=33708
Score = 114 bits (126), Expect = 2e-19
Identities = 212/309 (69%), Gaps = 3/309 (1%)
Strand=Plus/Minus
Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136
|||||||||||||||||| || ||||| || || | ||| | || |||| ||||||||
Sbjct 30055 GCCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTG 29996
Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATA 2175196
|| |||||||||||||||||||||||| | |||||| | | ||||| || | ||
Sbjct 29995 CAGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTA 29936
Query 2175197 GGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAG 2175256
||| | | | | || | |||| || | |||| ||| ||| || |||
Sbjct 29935 CTGCGGCGAGATGGTGTCCAGCATCTCGCTGGCGATGGGCATGCCAGCGT--TCG-TCAG 29879
Query 2175257 GTCGCGCAGCAGTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAG 2175316
|||| | || | ||||| | ||| || | | | | || |||||
Sbjct 29878 GTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGAT 29819
Query 2175317 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 2175376
|||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||||
Sbjct 29818 GTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGGC 29759
Query 2175377 GCGCATGAC 2175385
|||||| ||
Sbjct 29758 GCGCATCAC 29750
>seq1622
Length=53468
Score = 87.8 bits (96), Expect = 3e-11
Identities = 137/192 (71%), Gaps = 7/192 (4%)
Strand=Plus/Minus
Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 25339 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 25280
Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427
||||||||||||| | | | ||| |||||| ||| | | ||||| | ||
Sbjct 25279 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 25225
Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487
||| || || | ||||||||| || | || ||||| ||| || || ||||| |
Sbjct 25224 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 25165
Query 2175488 CACCAAGAGACG 2175499
|||| |||||
Sbjct 25164 GACCAGCAGACG 25153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915674104861820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |