Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5107 196 8e-44 seq4076 185 1e-40 seq3275 129 9e-24 seq1581 114 2e-19 seq1622 87.8 3e-11 >seq5107 Length=15001 Score = 196 bits (216), Expect = 8e-44 Identities = 348/498 (70%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 ||| | ||| |||||||| ||||| || ||||||||||| | || || || |||| Sbjct 13634 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 13575 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620 |||||||||||||||||||||||| ||||||| ||| | || |||| ||| | || Sbjct 13574 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 13515 Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677 | |||||| |||| ||| | ||| || ||| ||||| || ||||| | | || Sbjct 13514 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 13459 Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 ||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| | Sbjct 13458 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACGA 13399 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797 | || ||||| || | || ||||| | | || |||| | ||||| | ||| || Sbjct 13398 ACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 13339 Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857 | | | |||| | |||||| || |||| ||| ||||||||| ||||| Sbjct 13338 AATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 13279 Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917 | | ||||| | |||||| | || |||| |||||||| || || | || | || | Sbjct 13278 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 13219 Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976 || ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || || Sbjct 13218 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 13160 Query 2411977 CAGAGAGGGCGCTCGGCC 2411994 ||| || |||||| || Sbjct 13159 TTGAGCGGACGCTCGCCC 13142 >seq4076 Length=19007 Score = 185 bits (204), Expect = 1e-40 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| || || || |||||| |||||| ||||| |||||||| | || Sbjct 9852 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 9911 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || ||||| ||||| | || | Sbjct 9912 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 9971 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| | | ||||||||||| || ||||| || ||||||||||||||||| | ||||||| Sbjct 9972 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 10031 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| || | || ||| ||||| |||||||||||||| |||| Sbjct 10032 TGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 10091 Query 794131 CGATGATGATCT 794142 || ||||||||| Sbjct 10092 CGGTGATGATCT 10103 >seq3275 Length=64463 Score = 129 bits (142), Expect = 9e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||||||||| ||| | || |||||| | || |||||||| ||||||||| Sbjct 53084 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 53143 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| ||||| || ||||||||||| || |||||| || Sbjct 53144 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 53194 >seq1581 Length=33708 Score = 114 bits (126), Expect = 2e-19 Identities = 212/309 (69%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136 |||||||||||||||||| || ||||| || || | ||| | || |||| |||||||| Sbjct 30055 GCCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTG 29996 Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATA 2175196 || |||||||||||||||||||||||| | |||||| | | ||||| || | || Sbjct 29995 CAGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTA 29936 Query 2175197 GGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAG 2175256 ||| | | | | || | |||| || | |||| ||| ||| || ||| Sbjct 29935 CTGCGGCGAGATGGTGTCCAGCATCTCGCTGGCGATGGGCATGCCAGCGT--TCG-TCAG 29879 Query 2175257 GTCGCGCAGCAGTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAG 2175316 |||| | || | ||||| | ||| || | | | | || ||||| Sbjct 29878 GTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGAT 29819 Query 2175317 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 2175376 |||||||||| || ||||||||||| |||||||| || | ||||| |||| |||||| Sbjct 29818 GTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGGC 29759 Query 2175377 GCGCATGAC 2175385 |||||| || Sbjct 29758 GCGCATCAC 29750 >seq1622 Length=53468 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 25339 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 25280 Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427 ||||||||||||| | | | ||| |||||| ||| | | ||||| | || Sbjct 25279 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 25225 Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487 ||| || || | ||||||||| || | || ||||| ||| || || ||||| | Sbjct 25224 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 25165 Query 2175488 CACCAAGAGACG 2175499 |||| ||||| Sbjct 25164 GACCAGCAGACG 25153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915674104861820