Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 260 1e-64
seq4076 178 1e-39
seq1227 91.5 1e-13
>seq1094
Length=88458
Score = 260 bits (288), Expect = 1e-64
Identities = 1026/1591 (64%), Gaps = 47/1591 (3%)
Strand=Plus/Minus
Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998
||||||| || ||||| || ||||||||||| ||||||||||| | ||| | |
Sbjct 26520 GCAGCGGCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCG 26461
Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCG---GGTGCGGCACAAACAGATTAAACGAC 148055
||||| ||| | ||| | || | ||| ||| | || | ||| | |||
Sbjct 26460 AAGTGCATCGAGG---TGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGAC 26404
Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATC 148112
|| || || |||||||| |||||||| |||||||| | || || || ||||
Sbjct 26403 TGCGATTGATCGATGAACGCACCACGGTCGGCGGCCATCTGAACGATGGTGCGCTGGGAA 26344
Query 148113 TTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC 148172
| ||||||| | |||||||| ||| |||||| | ||| || ||| | ||| ||
Sbjct 26343 ---AGCTCCCAGACGGTCTTGTAGAGCGCCTTGATGTCATCTGGGATGTTGGGGATCTGC 26287
Query 148173 TGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGC 148232
|| | |||||| | |||| || | || ||| | || | | || |||
Sbjct 26286 TGAATAGAGCCGTTGGAGGCAATGATGCGGTTCTTCATCTGATCAGACCACAGTCCGAGG 26227
Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292
|| | ||||| | | || || | || || ||||| || || |||||||| || ||
Sbjct 26226 TCAACGAGGTCCTTCAGGAGCCACGGGTTGACAACCTGGAATTCACCGGCGAGGACACGG 26167
Query 148293 CGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351
|| ||| || | ||| ||| | || || || |||| ||| ||| | ||||||
Sbjct 26166 CG-AGAGTAGATGTTTGAGGTATAAGGCTCGAAACACTCATTGAAGCCGAGAATCTGGCT 26108
Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411
||||| || |||||||| || || |||| |||||||| |||| | | ||
Sbjct 26107 GGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAGGAGTTGCGGGTACCGTGCTGGGCAAT 26048
Query 148412 TTTGCGCTTCAGAGCCG-CCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTC 148468
| | ||||| ||| | ||||||||||||| ||| | ||| | | |||||||||||
Sbjct 26047 CTCGGCCTTCA-AGCTGTCCCAGTCCCAGAGGTCGGTGGGGGTCTTA--TTCCACATGTC 25991
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
|| |||||||| || || || |||||||||| | ||| ||| || |||| |
Sbjct 25990 ATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGGGCCGTCCCT 25931
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || || || || ||| || ||| ||| || |||||| ||||| |
Sbjct 25930 CTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAAT 25871
Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648
||| ||| || ||| ||| |||||||||| || | || ||||| ||
Sbjct 25870 GTTCAGCTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGAAAGCGTCAGC 25811
Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708
||| || | || || || | || || ||||| |||||| | || |||
Sbjct 25810 AAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTTGCTCTTCCTGGCT-TCTG 25752
Query 148709 GAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767
|| | || |||||||| ||| |||||||||| ||||| || | ||||| ||||
Sbjct 25751 GAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAA 25692
Query 148768 TTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTACGATGCATCGGTTCA 148818
| | ||| | || ||||| || | |||| |||| | | ||| |
Sbjct 25691 CCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAAGG-TGGGT--A 25635
Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878
|| | ||| |||| |||||||| || ||||| || ||| ||||||| ||||| |
Sbjct 25634 GCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTT 25575
Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938
|| |||||| ||| || || ||| | |||||| || |||||||||| |||||
Sbjct 25574 CGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGC 25515
Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GA 148995
| ||||||||||| |||| | || || ||||| ||||| | || | || |
Sbjct 25514 AGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGT 25455
Query 148996 ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCG-TAGCGACCCTCCTGCTCGTATAAA 149054
||| || | ||| || || || || | || |||||||||| ||| ||
Sbjct 25454 ACC---AGAGCTTCTGAGCACGGACAGTCT-CGCGACCACGACCCTCCTTCTCATACTGC 25399
Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114
|| || |||||| |||| || ||| ||| | ||||| ||||||| || |||
Sbjct 25398 TCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGG 25339
Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174
|||||||| | ||| ||||| | | || |||||||| || |||||||| | ||||
Sbjct 25338 CACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 25279
Query 149175 AGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTG 149234
|| ||||| | ||||| || || || || || ||| || |||| |
Sbjct 25278 AGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCG 25219
Query 149235 AGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC 149294
|| | |||||| | || || ||||||||||| | ||| | |||| || || ||||
Sbjct 25218 AGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGC 25159
Query 149295 TTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCA 149351
||| || |||||||| |||| ||| | ||||||| |||| || | ||||||
Sbjct 25158 TTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATG 25099
Query 149352 ATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGC 149411
| ||| || |||||||||||| | |||| ||||| || || | |||
Sbjct 25098 AGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGA 25039
Query 149412 ACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGA 149470
||||| | ||||| || ||| || ||| ||||| || || ||| | || ||
Sbjct 25038 ACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTC-AGGGTGTC 24980
Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATG 149501
|||||| ||||| ||||| || |||||||
Sbjct 24979 GTAGATACCCTCAATGCTATCCTCCTTCATG 24949
>seq4076
Length=19007
Score = 178 bits (196), Expect = 1e-39
Identities = 347/505 (69%), Gaps = 11/505 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || || ||||| ||||| || ||||| || ||||| | | ||| ||||| |
Sbjct 9865 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTC 9924
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| ||| ||| |||| ||| | ||||| | || |||||
Sbjct 9925 CATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAG 9984
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || || ||||| ||||||| ||||||| || | |||||||||||| || | |
Sbjct 9985 GCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGT-CGCGTTCATGCCAAGAAGAG 10043
Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGA--ACAT 120587
| || || | || ||||| ||||||||||| || || || ||||| ||| | |
Sbjct 10044 CGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCT 10103
Query 120588 GGCGAGCATAGT-GTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646
| || | | | ||| |||| || | || |||| ||| | | |||||| |
Sbjct 10104 TCTCAACAGATTCGGGGCTGGGCTTC--GACTT-GATGTGCG---AGAACAGCAGGCAGG 10157
Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706
| ||||| || |||| |||||| ||||| || || ||||| ||| || |||| || |
Sbjct 10158 CGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAG 10217
Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766
|||||| ||| | |||||| |||| |||| ||| || ||| ||||| | |
Sbjct 10218 GCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATAC 10277
Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826
|||| ||| || || || | | |||| || || |||| ||||| | |||||
Sbjct 10278 CCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCC 10337
Query 120827 ACTTCATGGCCCACTCGGCCTTTTT 120851
| | |||||| |||||||| ||
Sbjct 10338 AACGAAGGGCCCAGTCGGCCTTCTT 10362
>seq1227
Length=46781
Score = 91.5 bits (100), Expect = 1e-13
Identities = 87/109 (80%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| ||| || ||| | | | ||||||||||||||||
Sbjct 32789 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCGAGCTGCTTGC 32731
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570
||||| | || || ||||||||||| || || ||||| |||||||| ||
Sbjct 32730 CCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGT 32682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483388289951200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |