Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1094 260 1e-64 seq4076 178 1e-39 seq1227 91.5 1e-13 >seq1094 Length=88458 Score = 260 bits (288), Expect = 1e-64 Identities = 1026/1591 (64%), Gaps = 47/1591 (3%) Strand=Plus/Minus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 ||||||| || ||||| || ||||||||||| ||||||||||| | ||| | | Sbjct 26520 GCAGCGGCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCG 26461 Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCG---GGTGCGGCACAAACAGATTAAACGAC 148055 ||||| ||| | ||| | || | ||| ||| | || | ||| | ||| Sbjct 26460 AAGTGCATCGAGG---TGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGAC 26404 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATC 148112 || || || |||||||| |||||||| |||||||| | || || || |||| Sbjct 26403 TGCGATTGATCGATGAACGCACCACGGTCGGCGGCCATCTGAACGATGGTGCGCTGGGAA 26344 Query 148113 TTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC 148172 | ||||||| | |||||||| ||| |||||| | ||| || ||| | ||| || Sbjct 26343 ---AGCTCCCAGACGGTCTTGTAGAGCGCCTTGATGTCATCTGGGATGTTGGGGATCTGC 26287 Query 148173 TGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGC 148232 || | |||||| | |||| || | || ||| | || | | || ||| Sbjct 26286 TGAATAGAGCCGTTGGAGGCAATGATGCGGTTCTTCATCTGATCAGACCACAGTCCGAGG 26227 Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 || | ||||| | | || || | || || ||||| || || |||||||| || || Sbjct 26226 TCAACGAGGTCCTTCAGGAGCCACGGGTTGACAACCTGGAATTCACCGGCGAGGACACGG 26167 Query 148293 CGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || ||| || | ||| ||| | || || || |||| ||| ||| | |||||| Sbjct 26166 CG-AGAGTAGATGTTTGAGGTATAAGGCTCGAAACACTCATTGAAGCCGAGAATCTGGCT 26108 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||||| || |||||||| || || |||| |||||||| |||| | | || Sbjct 26107 GGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAGGAGTTGCGGGTACCGTGCTGGGCAAT 26048 Query 148412 TTTGCGCTTCAGAGCCG-CCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTC 148468 | | ||||| ||| | ||||||||||||| ||| | ||| | | ||||||||||| Sbjct 26047 CTCGGCCTTCA-AGCTGTCCCAGTCCCAGAGGTCGGTGGGGGTCTTA--TTCCACATGTC 25991 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 || |||||||| || || || |||||||||| | ||| ||| || |||| | Sbjct 25990 ATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGGGCCGTCCCT 25931 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || || || || ||| || ||| ||| || |||||| ||||| | Sbjct 25930 CTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAAT 25871 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 ||| ||| || ||| ||| |||||||||| || | || ||||| || Sbjct 25870 GTTCAGCTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGAAAGCGTCAGC 25811 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 ||| || | || || || | || || ||||| |||||| | || ||| Sbjct 25810 AAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTTGCTCTTCCTGGCT-TCTG 25752 Query 148709 GAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || | || |||||||| ||| |||||||||| ||||| || | ||||| |||| Sbjct 25751 GAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAA 25692 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTACGATGCATCGGTTCA 148818 | | ||| | || ||||| || | |||| |||| | | ||| | Sbjct 25691 CCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAAGG-TGGGT--A 25635 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 || | ||| |||| |||||||| || ||||| || ||| ||||||| ||||| | Sbjct 25634 GCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTT 25575 Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 || |||||| ||| || || ||| | |||||| || |||||||||| ||||| Sbjct 25574 CGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGC 25515 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GA 148995 | ||||||||||| |||| | || || ||||| ||||| | || | || | Sbjct 25514 AGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGT 25455 Query 148996 ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCG-TAGCGACCCTCCTGCTCGTATAAA 149054 ||| || | ||| || || || || | || |||||||||| ||| || Sbjct 25454 ACC---AGAGCTTCTGAGCACGGACAGTCT-CGCGACCACGACCCTCCTTCTCATACTGC 25399 Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114 || || |||||| |||| || ||| ||| | ||||| ||||||| || ||| Sbjct 25398 TCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGG 25339 Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174 |||||||| | ||| ||||| | | || |||||||| || |||||||| | |||| Sbjct 25338 CACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 25279 Query 149175 AGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTG 149234 || ||||| | ||||| || || || || || ||| || |||| | Sbjct 25278 AGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCG 25219 Query 149235 AGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC 149294 || | |||||| | || || ||||||||||| | ||| | |||| || || |||| Sbjct 25218 AGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGC 25159 Query 149295 TTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCA 149351 ||| || |||||||| |||| ||| | ||||||| |||| || | |||||| Sbjct 25158 TTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATG 25099 Query 149352 ATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGC 149411 | ||| || |||||||||||| | |||| ||||| || || | ||| Sbjct 25098 AGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGA 25039 Query 149412 ACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGA 149470 ||||| | ||||| || ||| || ||| ||||| || || ||| | || || Sbjct 25038 ACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTC-AGGGTGTC 24980 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATG 149501 |||||| ||||| ||||| || ||||||| Sbjct 24979 GTAGATACCCTCAATGCTATCCTCCTTCATG 24949 >seq4076 Length=19007 Score = 178 bits (196), Expect = 1e-39 Identities = 347/505 (69%), Gaps = 11/505 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || ||||| ||||| || ||||| || ||||| | | ||| ||||| | Sbjct 9865 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTC 9924 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| ||| ||| |||| ||| | ||||| | || ||||| Sbjct 9925 CATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAG 9984 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||||| ||||||| || | |||||||||||| || | | Sbjct 9985 GCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGT-CGCGTTCATGCCAAGAAGAG 10043 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGA--ACAT 120587 | || || | || ||||| ||||||||||| || || || ||||| ||| | | Sbjct 10044 CGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCT 10103 Query 120588 GGCGAGCATAGT-GTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | || | | | ||| |||| || | || |||| ||| | | |||||| | Sbjct 10104 TCTCAACAGATTCGGGGCTGGGCTTC--GACTT-GATGTGCG---AGAACAGCAGGCAGG 10157 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 | ||||| || |||| |||||| ||||| || || ||||| ||| || |||| || | Sbjct 10158 CGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAG 10217 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| ||| | |||||| |||| |||| ||| || ||| ||||| | | Sbjct 10218 GCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATAC 10277 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| ||| || || || | | |||| || || |||| ||||| | ||||| Sbjct 10278 CCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCC 10337 Query 120827 ACTTCATGGCCCACTCGGCCTTTTT 120851 | | |||||| |||||||| || Sbjct 10338 AACGAAGGGCCCAGTCGGCCTTCTT 10362 >seq1227 Length=46781 Score = 91.5 bits (100), Expect = 1e-13 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | |||||||||||||||| Sbjct 32789 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCGAGCTGCTTGC 32731 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||| | || || ||||||||||| || || ||||| |||||||| || Sbjct 32730 CCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGT 32682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483388289951200