Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4076 158 2e-32
seq1581 109 8e-18
seq1094 95.1 2e-13
>seq4076
Length=19007
Score = 158 bits (174), Expect = 2e-32
Identities = 193/258 (75%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|| |||||||| |||||| |||||||||||||| ||||| ||| || | || || |
Sbjct 10106 AGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTCCCCG 10047
Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637
| || || | ||||||||||| | | ||||||||||||||||| | | || || || ||
Sbjct 10046 TCGCTCTTCTTGGCATGAACGCGA-CTCTCATGTGCCAGTACATCG-AGTTCGTTGCTGA 9989
Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697
||||||||| | |||||| ||| | ||||| ||||| || ||||||| ||| |
Sbjct 9988 CCGCCTGCTGGTGGCGCTGGGCAAC-AAGAAGTACTACAACTCGACCAACCCCTTCGACT 9930
Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756
|||||| ||||||||| | |||||||| ||||| |||||| |||| ||| || |
Sbjct 9929 TCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACT 9870
Query 1456757 ACGCCAAGGCCGGCGTCA 1456774
|| ||||| || ||||
Sbjct 9869 ACCAGAAGGCGGGTGTCA 9852
Score = 140 bits (154), Expect = 5e-27
Identities = 211/296 (71%), Gaps = 13/296 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||| || || ||||| || |||||| | || |
Sbjct 10764 GATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATC 10706
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| || | | ||| ||||||||| |||
Sbjct 10705 TTTCCAAGGATCTTCACG----ACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTC 10650
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||||||||||| ||| |||||||| || ||||||||| ||||||||| |
Sbjct 10649 ATCTCCCACGTCCTCGC-TTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGT 10591
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | |||||||| | || ||||| || | || ||||| ||||||||
Sbjct 10590 CGAACGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 10531
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063
|| || |||||||| ||||| ||||||||||| || |||||||| ||| |||
Sbjct 10530 TATGATGGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATACATCA 10475
>seq1581
Length=33708
Score = 109 bits (120), Expect = 8e-18
Identities = 121/159 (76%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809
|| |||||| |||| |||||| | || ||||||||||||||||||||| ||||||||
Sbjct 29942 GCCGACCTGATCACCGTCGGCGCCATTGGCGCGCGCACCACCGAGAGCCAGCTGCACCGC 30001
Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869
||| |||| || | ||| | | ||| | |||||||||||| ||||||||||| | |
Sbjct 30002 GAGCTGGCCTCCGGCCTGTCCTTCCCCGTCGGCTTCAAAAACGGCACCGACGGCTCCTT- 30060
Query 165870 GCGACG--GCCCTCGATGCCGTGCGCACTGCCGCCCAGC 165906
||||| ||| |||| ||| | || |||| |||||
Sbjct 30061 -CGACGTCGCCATCGACGCCATCGGC---GCCGTCCAGC 30095
>seq1094
Length=88458
Score = 95.1 bits (104), Expect = 2e-13
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236
||||||| |||| ||||||||| |||||| | || | || | | || | ||||| |
Sbjct 26313 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 26372
Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296
||||||| | | | |||| || ||||| ||||| | || | ||||| |
Sbjct 26373 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 26432
Query 263297 CGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCA 263356
|| | | ||||| ||||||||| | || ||| | ||||||||||| ||||
Sbjct 26433 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 26492
Query 263357 TGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413
||||||| || ||||||| | ||||||| |||| || ||||| ||||| ||||
Sbjct 26493 TGTACTACCTCCGCACCCAGGCCGCTGCTGCTCCCATCCAGTTCACTGTCGACCAGG 26549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177292289111560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |