Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4076 89.7 7e-13
>seq4076
Length=19007
Score = 89.7 bits (98), Expect = 7e-13
Identities = 299/459 (65%), Gaps = 20/459 (4%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || ||| || ||||| ||||||||||| |||||||| || || || ||||| |
Sbjct 9850 CATGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTT 9909
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
| || || || |||||||| || || || || || | || || | || || ||
Sbjct 9910 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCC 9969
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT-TCACAAT 39491
| | | || | || ||||| || || ||||| ||| | || | |
Sbjct 9970 CAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCG-T 10028
Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551
|||| || | || || || ||||| ||||| || ||||| || ||||| || || |
Sbjct 10029 TCATGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAG 10088
Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCAC--TCGGTG----GATGCAA-TAAATGT 39604
|||| || || ||| || |||| || |||| | | | | | | ||||
Sbjct 10089 CCTCGGTGATGATC----TT-----CTCAACAGATTCGGGGCTGGGCTTCGACTTGATGT 10139
Query 39605 TTAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662
| ||| | |||||||||||| ||| | ||||||||| | | || | || |
Sbjct 10140 GCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCAT 10199
Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
| || || || | |||||||| || |||||||| |||||||| || |||| || ||||
Sbjct 10200 TGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAG 10259
Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761
| || |||||||| || || || || || || ||||
Sbjct 10260 AGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 10298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686862605383200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |