Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4076 89.7 7e-13 >seq4076 Length=19007 Score = 89.7 bits (98), Expect = 7e-13 Identities = 299/459 (65%), Gaps = 20/459 (4%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| || ||||| ||||||||||| |||||||| || || || ||||| | Sbjct 9850 CATGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTT 9909 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || || |||||||| || || || || || | || || | || || || Sbjct 9910 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCC 9969 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT-TCACAAT 39491 | | | || | || ||||| || || ||||| ||| | || | | Sbjct 9970 CAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCG-T 10028 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || | || || || ||||| ||||| || ||||| || ||||| || || | Sbjct 10029 TCATGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAG 10088 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCAC--TCGGTG----GATGCAA-TAAATGT 39604 |||| || || ||| || |||| || |||| | | | | | | |||| Sbjct 10089 CCTCGGTGATGATC----TT-----CTCAACAGATTCGGGGCTGGGCTTCGACTTGATGT 10139 Query 39605 TTAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 | ||| | |||||||||||| ||| | ||||||||| | | || | || | Sbjct 10140 GCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCAT 10199 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | || || || | |||||||| || |||||||| |||||||| || |||| || |||| Sbjct 10200 TGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAG 10259 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 | || |||||||| || || || || || || |||| Sbjct 10260 AGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 10298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686862605383200