Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2014 91.5 2e-13
seq1094 89.7 6e-13
seq4076 86.0 8e-12
>seq2014
Length=35049
Score = 91.5 bits (100), Expect = 2e-13
Identities = 275/413 (67%), Gaps = 25/413 (6%)
Strand=Plus/Minus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| || |||||||| ||||| | ||| || | || |||||||||||| ||||
Sbjct 32602 AAACCGTCCATCTCCGTGAGGATTTGGTTCAGGGTACTTTCTCTCTCATC-GTTGC---- 32548
Query 11600 ATACCACC--AGCACTGCGTTGC-------TTGCCCACCGCATCAATCTCATCAATGAAG 11650
||| || ||| |||| | || ||||| | ||||| || ||||| |||||
Sbjct 32547 -CACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGATAGCATCGATTTCATCGATGAAA 32489
Query 11651 ACAATACA-TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709
| ||| || || || | ||| || || || | || || || || || || || ||
Sbjct 32488 ATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAGGTCACGGACTCTAGAGGGGCC 32430
Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767
||||| |||||||||||||| || | | | || | | || || ||| || || |
Sbjct 32429 GACACCCACAAACATCTCCACGAACTCGGAACCGC-TAACGCT-GAAGAAAGGCACTTGA 32372
Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827
|||||||| || |||| ||||| | ||||| || ||||| || ||| | ||||
Sbjct 32371 GATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGGTACCGGGAGGACCTGAGAGA 32312
Query 11828 AGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885
| ||| || || ||||| |||||||| |||| | | | | | | |||| |||||| |
Sbjct 32311 ATGGCACCACGCGGGATTTTGGCACCGAGCTTCTGATAGA-CAC-CAGGTTCCTTGAGGA 32254
Query 11886 AATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||| | ||| | |||||| |||| || || |||| |||
Sbjct 32253 AACTGACGAACTCCATGATTTCTTGCTTGGCCTCGTCCATTCCAGCAACGTCA 32201
>seq1094
Length=88458
Score = 89.7 bits (98), Expect = 6e-13
Identities = 296/458 (65%), Gaps = 2/458 (0%)
Strand=Plus/Minus
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
|| || || ||||| ||||| ||||| | | |||||||| | ||||| ||
Sbjct 25626 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 25567
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
| |||||| || ||| || || | ||||| ||||| ||||| |||||| |||
Sbjct 25566 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 25507
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420
||||| | |||| |||| | || || || ||| | | ||| || || | ||| | |
Sbjct 25506 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 25447
Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480
|| | | || ||| | || | || |||||| ||| |||| |||||||||
Sbjct 25446 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 25388
Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540
|| || |||||||| |||||| ||||| || || || || || | || |
Sbjct 25387 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 25328
Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600
||| || | |||||| ||||||||||| || || |||||||| || | | ||
Sbjct 25327 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 25268
Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660
|| || | | ||| |||| || | || ||||| || | || || || |
Sbjct 25267 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 25208
Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698
|| ||| || ||||| ||||| || |||| |||| ||
Sbjct 25207 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 25170
>seq4076
Length=19007
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|||||||| || || || || ||||| ||||| | ||| |||||||| || ||||||
Sbjct 10175 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 10234
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|| | ||| |||| | | ||| || ||| ||||||||||||||| || ||| ||
Sbjct 10235 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 10294
Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818
|||| ||||| |||||||
Sbjct 10295 GCAATGAGGCGCGATGCGAAGG 10316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627989764848000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |