Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1288 138 3e-27
seq2903 102 2e-16
seq656 93.3 1e-13
>seq1288
Length=17335
Score = 138 bits (152), Expect = 3e-27
Identities = 710/1121 (63%), Gaps = 21/1121 (2%)
Strand=Plus/Plus
Query 349532 cccGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| || || ||||| || ||||| | || |||| ||| | ||| || | || |
Sbjct 141 CCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACCTC 200
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | ||||| | ||||| || ||||| || || || | ||||||
Sbjct 201 GGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGT 260
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || |||||| || | || || || | || || || ||
Sbjct 261 CAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 320
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG---AGTGACCAAGaaaaaaaT 349768
||||| ||||| || || || || || ||||| || | | | || | || ||
Sbjct 321 CCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAAGGCCACTGGC---GAGCGCAAC 377
Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828
| || || || ||| | |||||||||||||| ||||| || || || || | || |||
Sbjct 378 GTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGGAG 437
Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
|| || || || || || | || || ||||| || || |||||||| || || |||||
Sbjct 438 GGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTGAC 497
Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948
|| || || || || || || || ||||| ||| | |||| ||| | |||
Sbjct 498 AACCGCCTTGTCAACCACTTCGTCAACGAATTCAAGAG-AAAGCACAAAAAGGACTTGAC 556
Query 349949 GA-TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007
| || || | || | || || || | ||||| || || ||||| ||||| || |
Sbjct 557 TACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCT 616
Query 350008 AT-CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCT 350066
| || || || | || ||||| || || || || || || || || | || ||||
Sbjct 617 GTCCAGCT-CTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCT 675
Query 350067 TTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAA 350126
| || || || |||||||| || || || | || ||| || || | | || |
Sbjct 676 ACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCA 735
Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAA 350185
|||| ||||| || || | ||||| || || | | | || | | | ||
Sbjct 736 TGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCG-TCCACGAG 794
Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245
| || | |||||||| || || ||||| || || | || || | | || || ||
Sbjct 795 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 854
Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305
|| || ||||| || || | || || || || ||||| || ||||| || ||||||
Sbjct 855 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 914
Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT-CTAAAATT-----GATGATCTA 350359
|| || ||||| |||| | || || | | | || || || | | || |
Sbjct 915 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 971
Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419
| || || ||||| |||| || || || || | || || |||||| || ||||||
Sbjct 972 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 1031
Query 350420 GTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479
||| || | || | || | || || || |||||| | || || || ||
Sbjct 1032 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 1091
Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539
|| || ||||| | || || || || || || ||||| ||||||||||| ||
Sbjct 1092 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 1151
Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599
|| || || || || | || || | | ||||| || || | || |||
Sbjct 1152 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 1211
Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640
|| ||||| || ||| | ||||| ||||| | || |||||
Sbjct 1212 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTAT 1252
>seq2903
Length=84294
Score = 102 bits (112), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
||||| ||||| | || |||||| ||||||| |||||||||||||||||||| ||
Sbjct 6516 CGTGGAACACCGAGAGTGACATTC---TTAGATGACACACCAGCAAAGTGGAAAGTGTTC 6460
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||| || || ||||| |||| ||||| ||||| ||
Sbjct 6459 AGTGTCATCTGTGTAGCAGGCTCACCGATGGATTGCGCGGCAAGCACGCCCACCATCTCG 6400
Query 377578 CCAGGATTGACAATAGC 377594
||||| |||| || ||
Sbjct 6399 CCAGGGCTGACGATCGC 6383
>seq656
Length=45863
Score = 93.3 bits (102), Expect = 1e-13
Identities = 195/289 (67%), Gaps = 5/289 (2%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| ||| | ||||| || ||||| || || || || ||| | | || || || || ||
Sbjct 1009 GCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCTCAGAGAGCCGCTACCAAGGACGCC 950
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| | |||||| || | ||||| || | | | || || ||||| || || || |
Sbjct 949 GGTACCATTGCCGGTCTGAATGTCCTCCGTGTTGTCAACGAGCCCACCGCGGCCGCTCTG 890
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----aTATTCTTATTTTTGATTT 349785
|| || || || || || | | |||| |||| || | || || | | ||| |
Sbjct 889 GCCTACGGTCTGGACAAGAAGGATGAC-AAGACTGAACGCCAGATCATTGTCTACGATCT 831
Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845
|||||||||||||| ||||| || | || || | || ||||| |||| || || |
Sbjct 830 TGGTGGTGGTACTTTCGATGTTTCCATTCTTACTGTCGACGAGGGCGTTTTCGAGGTCCA 771
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894
|| || |||||||| || || |||||||| || || ||||| || |||
Sbjct 770 GGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGT 722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515149951620140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |