Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1288 138 3e-27 seq2903 102 2e-16 seq656 93.3 1e-13 >seq1288 Length=17335 Score = 138 bits (152), Expect = 3e-27 Identities = 710/1121 (63%), Gaps = 21/1121 (2%) Strand=Plus/Plus Query 349532 cccGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| || ||||| | || |||| ||| | ||| || | || | Sbjct 141 CCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACCTC 200 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | ||||| | ||||| || ||||| || || || | |||||| Sbjct 201 GGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGT 260 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || | || || || | || || || || Sbjct 261 CAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 320 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG---AGTGACCAAGaaaaaaaT 349768 ||||| ||||| || || || || || ||||| || | | | || | || || Sbjct 321 CCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAAGGCCACTGGC---GAGCGCAAC 377 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || || ||| | |||||||||||||| ||||| || || || || | || ||| Sbjct 378 GTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGGAG 437 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || || || || | || || ||||| || || |||||||| || || ||||| Sbjct 438 GGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTGAC 497 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948 || || || || || || || || ||||| ||| | |||| ||| | ||| Sbjct 498 AACCGCCTTGTCAACCACTTCGTCAACGAATTCAAGAG-AAAGCACAAAAAGGACTTGAC 556 Query 349949 GA-TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007 | || || | || | || || || | ||||| || || ||||| ||||| || | Sbjct 557 TACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCT 616 Query 350008 AT-CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCT 350066 | || || || | || ||||| || || || || || || || || | || |||| Sbjct 617 GTCCAGCT-CTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCT 675 Query 350067 TTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAA 350126 | || || || |||||||| || || || | || ||| || || | | || | Sbjct 676 ACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCA 735 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAA 350185 |||| ||||| || || | ||||| || || | | | || | | | || Sbjct 736 TGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCG-TCCACGAG 794 Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245 | || | |||||||| || || ||||| || || | || || | | || || || Sbjct 795 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 854 Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 || || ||||| || || | || || || || ||||| || ||||| || |||||| Sbjct 855 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 914 Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT-CTAAAATT-----GATGATCTA 350359 || || ||||| |||| | || || | | | || || || | | || | Sbjct 915 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 971 Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419 | || || ||||| |||| || || || || | || || |||||| || |||||| Sbjct 972 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 1031 Query 350420 GTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479 ||| || | || | || | || || || |||||| | || || || || Sbjct 1032 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 1091 Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539 || || ||||| | || || || || || || ||||| ||||||||||| || Sbjct 1092 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 1151 Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599 || || || || || | || || | | ||||| || || | || ||| Sbjct 1152 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 1211 Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 || ||||| || ||| | ||||| ||||| | || ||||| Sbjct 1212 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTAT 1252 >seq2903 Length=84294 Score = 102 bits (112), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| ||||| | || |||||| ||||||| |||||||||||||||||||| || Sbjct 6516 CGTGGAACACCGAGAGTGACATTC---TTAGATGACACACCAGCAAAGTGGAAAGTGTTC 6460 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||| || || ||||| |||| ||||| ||||| || Sbjct 6459 AGTGTCATCTGTGTAGCAGGCTCACCGATGGATTGCGCGGCAAGCACGCCCACCATCTCG 6400 Query 377578 CCAGGATTGACAATAGC 377594 ||||| |||| || || Sbjct 6399 CCAGGGCTGACGATCGC 6383 >seq656 Length=45863 Score = 93.3 bits (102), Expect = 1e-13 Identities = 195/289 (67%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | ||||| || ||||| || || || || ||| | | || || || || || Sbjct 1009 GCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCTCAGAGAGCCGCTACCAAGGACGCC 950 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || | ||||| || | | | || || ||||| || || || | Sbjct 949 GGTACCATTGCCGGTCTGAATGTCCTCCGTGTTGTCAACGAGCCCACCGCGGCCGCTCTG 890 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----aTATTCTTATTTTTGATTT 349785 || || || || || || | | |||| |||| || | || || | | ||| | Sbjct 889 GCCTACGGTCTGGACAAGAAGGATGAC-AAGACTGAACGCCAGATCATTGTCTACGATCT 831 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 |||||||||||||| ||||| || | || || | || ||||| |||| || || | Sbjct 830 TGGTGGTGGTACTTTCGATGTTTCCATTCTTACTGTCGACGAGGGCGTTTTCGAGGTCCA 771 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 || || |||||||| || || |||||||| || || ||||| || ||| Sbjct 770 GGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGT 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515149951620140