Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10-
07] 5,380 sequences; 48,332,782 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 239 5e-58
seq1227 102 9e-17
>seq1094
Length=88458
Score = 239 bits (264), Expect = 5e-58
Identities = 738/1121 (66%), Gaps = 43/1121 (4%)
Strand=Plus/Minus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||| | |||| || |||| ||||| || ||| |||||| ||||| ||
Sbjct 25999 CCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGG 25940
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
||| ||| ||||||| |||||| ||| | | || || ||||| || || ||| ||
Sbjct 25939 GCCGTCCCTCTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAA 25880
Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719
|| |||||| | || | ||| || ||||||| || | | | ||
Sbjct 25879 GATTTGAATGTTCAG-CTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGA 25821
Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779
| ||||||| || || | || || | ||||| || ||||| ||| |||| | ||
Sbjct 25820 AAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTT-GCTCTTC 25762
Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AAC 80837
| ||| || |||| |||||| |||| | || |||| |||||| || | || ||
Sbjct 25761 CTGGCTTCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATT-CTTGACAAG 25703
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG--TTCCCCTTCA----CAAA 80891
||| | ||||| || ||||| |||| |||||| | |||| | || | ||
Sbjct 25702 CACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAA 25643
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
| || || ||| ||||| | |||||||| || || || |||| | | || ||||
Sbjct 25642 GGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTC 25583
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
||||||||| ||||| || || ||| || || ||||| |||||||| |||
Sbjct 25582 GACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTT 25523
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
| |||||| ||||||||| ||||| | ||| ||||||| |||||||| | || |||
Sbjct 25522 GCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAG 25463
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||| |||| ||| | || | || ||| || ||| || || | ||||
Sbjct 25462 GATCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCATA 25403
Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191
|| |||| | ||||| | |||| | | || | || | |||||||||||
Sbjct 25402 CTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTT 25343
Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGG 81248
||||||||| ||| ||| |||| |||| ||| ||| ||||||||| || ||
Sbjct 25342 AGGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGG 25286
Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306
|||||||| ||| ||| ||||| || |||||| ||||||| | || |||||
Sbjct 25285 AATCCAGAGAGCGTAGAAAAGGTCACG--AGCGCGAACCTCCTCTTTTCCGTGGTTCTTA 25228
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | ||||||||| | || || |||||||| ||||| || || | ||||| |
Sbjct 25227 CGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCA 25168
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| ||| | |||||||||| ||||| |||||||| ||| | ||||| | |
Sbjct 25167 CCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGC 25108
Query 81424 ATAGGGATGATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481
|||||||||| || | || ||| ||||| ||||| | || || |||| |
Sbjct 25107 ATAGGGATGAGGCCGT-TG-CTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCAC 25050
Query 81482 GCACCTTGCTGATTGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| | ||| | |||| |||||||| ||||| | ||| || ||| |||||
Sbjct 25049 GGA---TGCGG--TGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 24995
Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596
|||| ||| || || || ||||| |||||||| | |||||||| | | ||| ||
Sbjct 24994 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 24935
Query 81597 GCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635
| || |||||| || ||| || |||||||||||
Sbjct 24934 AGAAGCCAACTGAGG--CTTGGGAGTACCAGCATTGAACAG 24896
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| |||||| || | ||||
Sbjct 26514 GCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGC 26455
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || ||| ||| | | ||||||| || |||| ||| || || ||||| || |||
Sbjct 26454 ATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGACTGCGATTGA 26395
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
|||||| || ||||| || || |||||
Sbjct 26394 TCGATGAACGCACCACGGTCGGCGGCCAT 26366
>seq1227
Length=46781
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 32685 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 32744
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| || || ||||| || || |
Sbjct 32745 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 32804
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 32805 CGCCTGCGTGGTGG 32818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570272046625600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |