Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307925.1_202015-10- 07] 5,380 sequences; 48,332,782 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1227 98.7 2e-15 seq1094 96.9 8e-15 >seq1227 Length=46781 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || |||||||| || || | || || | ||||| Sbjct 32803 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 32744 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || |||| || |||||||| Sbjct 32743 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 32685 >seq1094 Length=88458 Score = 96.9 bits (106), Expect = 8e-15 Identities = 193/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | |||| ||| || |||||| |||||||| Sbjct 25545 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAACATGAAGGGG 25489 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || || | || ||| |||| || | ||| |||| ||| || ||||||||| Sbjct 25488 TTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACAGTC 25429 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | || || ||||| |||| | |||||| ||||||||||| |||||| Sbjct 25428 TCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAG 25369 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | ||||| || ||| || ||||| | ||| |||| |||| | || Sbjct 25368 ACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCA 25309 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || ||||||||||| || | |||||| || ||||||| Sbjct 25308 ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAA 25266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159072098203700