Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3000 93.3 4e-14 >seq3000 Length=185088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 ||| | || || || |||||||| || ||| | || || || ||||||||||| Sbjct 10470 TCGCTGATGTATGTGTCGATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATA 10529 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 ||||| || ||||| ||||| ||||| || | || || || || | ||| ||||| Sbjct 10530 ATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCGGAGCTGAAGCGTTCG 10589 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 | || || ||||||||||||||||| ||||||||| || || | | || ||| Sbjct 10590 ACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAGATG 10649 Query 17408 AAATATTTTTCGTC--CGGTGTAAGAAC--GCGCCAGTCCTTTAAATCTTTGGATATATC 17463 || | ||||| || || | | | | |||||| | | ||| ||||| | ||| Sbjct 10650 AAGAAGCGCTCGTCATCGTTG-AGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGATC 10708 Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | || || | ||||| ||| |||| | ||||| || ||||| | |||||| Sbjct 10709 AATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAAAT 10762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517521980512680