Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3000 230 2e-55 seq3261 111 2e-19 >seq3000 Length=185088 Score = 230 bits (254), Expect = 2e-55 Identities = 332/463 (72%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 |||||| |||| |||||||||| ||||| || || |||||| || || ||| || | Sbjct 10373 CCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACA-AGAACTCGAC 10315 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| |||||| | || ||||||||||||||||| ||||||| ||| ||| Sbjct 10314 CTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTT 10255 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 |||| |||| || ||||||||||| || ||||||||||| || |||||||| ||| || Sbjct 10254 CGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGA 10195 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 ||||||||| | || ||||| ||||| |||||| ||||| |||||||| ||| | Sbjct 10194 GCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACAT 10135 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | | || ||| | | ||| | ||||| ||||||| || |||| ||||| Sbjct 10134 CAAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGA 10075 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 | || |||||||| || || || || || ||| || || | || |||| | | Sbjct 10074 GAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAA-CGCGACTCTCA 10016 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || |||||||||||||| || ||| | |||||| | | ||||| | | ||| Sbjct 10015 TGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGT 9956 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||||| || ||||||| | ||||| ||| | |||||| Sbjct 9955 ACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTC 9913 Score = 178 bits (196), Expect = 1e-39 Identities = 213/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 10762 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 10703 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | |||| | ||||| |||||||| |||||| Sbjct 10702 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCC 10643 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| || Sbjct 10642 CACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGC 10583 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| | |||| ||| | ||||||| || ||||||||||| || ||||| || Sbjct 10582 TTCAGCTCCG-AGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGAT 10524 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | || || || | || ||| ||||||||||| ||| Sbjct 10523 GGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATAC 10478 >seq3261 Length=93105 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||||||||| ||||| || Sbjct 35845 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35786 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||||||||||||| | || || || || ||| | Sbjct 35785 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35726 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 35725 CGCCTGCGTGGTGG 35712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195686683760