Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10-
07] 3,651 sequences; 45,838,930 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3000 230 2e-55
seq3261 111 2e-19
>seq3000
Length=185088
Score = 230 bits (254), Expect = 2e-55
Identities = 332/463 (72%), Gaps = 4/463 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027
|||||| |||| |||||||||| ||||| || || |||||| || || ||| || |
Sbjct 10373 CCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACA-AGAACTCGAC 10315
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||| |||||| | || ||||||||||||||||| ||||||| ||| |||
Sbjct 10314 CTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTT 10255
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147
|||| |||| || ||||||||||| || ||||||||||| || |||||||| ||| ||
Sbjct 10254 CGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGA 10195
Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207
||||||||| | || ||||| ||||| |||||| ||||| |||||||| ||| |
Sbjct 10194 GCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACAT 10135
Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
| | || ||| | | ||| | ||||| ||||||| || |||| |||||
Sbjct 10134 CAAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGA 10075
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326
| || |||||||| || || || || || ||| || || | || |||| | |
Sbjct 10074 GAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAA-CGCGACTCTCA 10016
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
||| || |||||||||||||| || ||| | |||||| | | ||||| | | |||
Sbjct 10015 TGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGT 9956
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429
|||||||| || ||||||| | ||||| ||| | ||||||
Sbjct 9955 ACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTC 9913
Score = 178 bits (196), Expect = 1e-39
Identities = 213/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 10762 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 10703
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||||||| | |||| | ||||| |||||||| ||||||
Sbjct 10702 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCC 10643
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || |||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 10642 CACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGC 10583
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| |||| | |||| ||| | ||||||| || ||||||||||| || ||||| ||
Sbjct 10582 TTCAGCTCCG-AGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGAT 10524
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | || || || | || ||| ||||||||||| |||
Sbjct 10523 GGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATAC 10478
>seq3261
Length=93105
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || || |||| ||||||||| ||||| ||
Sbjct 35845 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35786
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || |||||||||||||||||||||| | || || || || ||| |
Sbjct 35785 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35726
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 35725 CGCCTGCGTGGTGG 35712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515195686683760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |