Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3327 105 1e-18 >seq3327 Length=32710 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || ||||||||||| || ||||||||||| |||| Sbjct 15527 CGCCAAGCGTCACCGCAAGATCT-TGCGCGATAACATCCAGGGTATCACCAAGCCCGCTA 15469 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| ||||| || ||||||||| | |||| Sbjct 15468 TCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 15427 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || || | |||| |||| | ||| ||||||| || || |||| ||| | Sbjct 15367 TGATCTACGAGGAAACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 15308 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || ||||||| | Sbjct 15307 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 15248 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | || || || ||||||| | || ||||| || ||||| || || Sbjct 15247 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAAACTCCT 15198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071861865143