Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3000 149 6e-31 seq3261 107 2e-18 >seq3000 Length=185088 Score = 149 bits (164), Expect = 6e-31 Identities = 336/500 (67%), Gaps = 9/500 (2%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| | |||||| | || | | |||| ||||| ||| Sbjct 10361 AAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCGCATCGCGC 10302 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | || || ||| || ||||| |||| || ||| ||| ||| |||| || Sbjct 10301 CTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTC 10242 Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 | |||| | ||| ||||||| || |||| || ||| ||||| || || ||| Sbjct 10241 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGC 10182 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGACA 46336 || |||||| ||||||| ||||| || || || || | | ||| || || | | | Sbjct 10181 GATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCC 10122 Query 46337 AGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGT 46396 ||| ||||| |||| || || ||| ||||| || | || |||||||||| Sbjct 10121 AGC-----CCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGT 10067 Query 46397 TTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGAC 46455 | | |||| ||| || |||| || || || ||||||||||| || ||| ||||| | Sbjct 10066 TCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCA-TGTGCCAG 10008 Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515 ||||||||||| || || ||||| ||||| ||| ||| | | |||| | | || Sbjct 10007 TACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAAC 9948 Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575 || ||| || || || || ||| | |||||||| || | ||||| || || || ||| Sbjct 9947 TCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTC 9888 Query 46576 GAAAAGCGCGTCGGCGAGTA 46595 || |||||||| || || || Sbjct 9887 GAGAAGCGCGTTGGTGACTA 9868 >seq3261 Length=93105 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | |||||||||||| || |||||||| ||| | Sbjct 35712 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 35771 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 35772 AGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 35831 Query 131128 ATTCCTTCTTTGTCGGT 131144 || || || ||||| || Sbjct 35832 ATGCCCTCCTTGTCTGT 35848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991258515840