Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10-
07] 3,651 sequences; 45,838,930 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3000 149 6e-31
seq3261 107 2e-18
>seq3000
Length=185088
Score = 149 bits (164), Expect = 6e-31
Identities = 336/500 (67%), Gaps = 9/500 (2%)
Strand=Plus/Minus
Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158
||||| |||||||||| | |||||| | || | | |||| ||||| |||
Sbjct 10361 AAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCGCATCGCGC 10302
Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218
| | || || ||| || ||||| |||| || ||| ||| ||| |||| ||
Sbjct 10301 CTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTC 10242
Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278
| |||| | ||| ||||||| || |||| || ||| ||||| || || |||
Sbjct 10241 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGC 10182
Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGACA 46336
|| |||||| ||||||| ||||| || || || || | | ||| || || | | |
Sbjct 10181 GATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCC 10122
Query 46337 AGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGT 46396
||| ||||| |||| || || ||| ||||| || | || ||||||||||
Sbjct 10121 AGC-----CCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGT 10067
Query 46397 TTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGAC 46455
| | |||| ||| || |||| || || || ||||||||||| || ||| ||||| |
Sbjct 10066 TCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCA-TGTGCCAG 10008
Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515
||||||||||| || || ||||| ||||| ||| ||| | | |||| | | ||
Sbjct 10007 TACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAAC 9948
Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575
|| ||| || || || || ||| | |||||||| || | ||||| || || || |||
Sbjct 9947 TCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTC 9888
Query 46576 GAAAAGCGCGTCGGCGAGTA 46595
|| |||||||| || || ||
Sbjct 9887 GAGAAGCGCGTTGGTGACTA 9868
>seq3261
Length=93105
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || ||||| | || | |||||||||||| || |||||||| ||| |
Sbjct 35712 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 35771
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| ||
Sbjct 35772 AGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 35831
Query 131128 ATTCCTTCTTTGTCGGT 131144
|| || || ||||| ||
Sbjct 35832 ATGCCCTCCTTGTCTGT 35848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471991258515840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |