Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3000 268 2e-66 seq3378 210 4e-49 seq3414 86.0 1e-11 >seq3000 Length=185088 Score = 268 bits (296), Expect = 2e-66 Identities = 599/901 (66%), Gaps = 75/901 (8%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| || ||||||||||| || ||||||| Sbjct 10753 ATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 10694 Query 42369 ACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || |||| | | || || |||| || ||| || || | || Sbjct 10693 CTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCCCACGTCCTC 10634 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || ||||||||||| ||||||||||| || || |||||||| | | | |||| Sbjct 10633 GCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGCTTCAGCTCC 10574 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| | ||||| |||||||||||||| |||||||| || |||||| | Sbjct 10573 GAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGATGGAGAACATC 10514 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || |||||| ||| | || || |||| |||||| || ||| |||| ||| Sbjct 10513 CATTCTGAGACCTACTCGCTTCTCATCGACACATACATCAGCGAGCCCAGGCAGCGCAAC 10454 Query 42606 GGGCTGTTCAAGGCCATGGAGA--------------------CGATG------------- 42632 || ||||| ||||| || | ||||| Sbjct 10453 TATCTTTTCAACGCCATTGATAACAGTAAGCCCAATCCGCCTCGATGATGCAAAGCTTGG 10394 Query 42633 --------------------CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA 42672 || ||||||||||||||||| |||||||| || |||| Sbjct 10393 ATCGCTAAAGTACTATAGTCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGA 10334 Query 42673 TCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGC 42731 || | | | || | | || |||| | | || | || || | ||||||||||| Sbjct 10333 TCT-GCGACAAGAACTCGACCTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGT 10275 Query 42732 ATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCC 42790 ||||||||| ||| | ||||||||||| |||||||||||| || || || ||||| Sbjct 10274 ATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTC-ATGCC 10216 Query 42791 CGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 || | || ||||| || || |||||| | || ||||| |||||| ||||| || Sbjct 10215 TGGTTTGACTTTCTCCAATGAGCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGC 10156 Query 42851 CTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG----GG 42906 |||||| ||||||||| ||| ||| | |||||| || || |||| | Sbjct 10155 CTGCCTGCTGTTCTCG---CACATCAAGTCGAAGCCC----AGCCCCGAATCCGTTGAGA 10103 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT 42966 |||||||| ||||| || |||||||||||||||||||||||| | | || ||||| Sbjct 10102 AGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCG 10043 Query 42967 CCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025 | || | |||||||| | |||| ||||||||| |||||||| ||| ||| || |||| Sbjct 10042 CTCTTCTTGGCATGAA-CGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGC 9984 Query 43026 CTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 || || ||| | | |||| || ||||||| || | |||||||||||| || Sbjct 9983 CTGCTGGTGGC-GCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCAT 9925 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||||| | | |||||||| ||||| |||||||||||||| | |||||||| Sbjct 9924 GGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 9865 Query 43145 G 43145 | Sbjct 9864 G 9864 >seq3378 Length=101758 Score = 210 bits (232), Expect = 4e-49 Identities = 486/727 (67%), Gaps = 4/727 (1%) Strand=Plus/Plus Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| || || || || || | |||||||| ||| || ||| ||| ||||| Sbjct 62829 GTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAGGTTGGA 62888 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||||| |||| || || ||| |||| ||||||| ||||||||| | Sbjct 62889 GCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAA 62948 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAG 244871 ||||||||| ||||| |||| |||||| |||||| ||| || |||||| | | || Sbjct 62949 CATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGC-GTACCAGAGCTTCTGAG 63007 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | ||| ||| |||| | ||||| ||| || | ||| ||||||||||| | Sbjct 63008 CACGGACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATT 63067 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | || |||| ||| | || || |||||| ||||||||||| |||| || Sbjct 63068 CCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGC 63127 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || || | || ||||||||| ||||| |||||||| || | ||| ||||| | Sbjct 63128 CGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCAC 63187 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 | | ||| || || |||||| | || || | |||| ||||| || Sbjct 63188 GAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAG 63247 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 | ||||| ||||| | ||||| |||| || ||||| |||||||| || |||||||| | Sbjct 63248 CATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAA 63307 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | | | || | |||| | | || || |||| | | |||||| | |||| Sbjct 63308 CGTAGCGGGC-AGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG 63366 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 || || || |||||| ||| || | | || | | | | || || | || Sbjct 63367 TTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACCGATACCA 63426 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 |||||| ||||||||| | ||| ||| |||| | |||||| || ||||| ||||| Sbjct 63427 CCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTA 63486 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 ||| |||||||| || || ||||| || | || ||| |||||||| | | | ||| Sbjct 63487 TCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTG 63546 Query 245411 AACAGAG 245417 ||||||| Sbjct 63547 AACAGAG 63553 >seq3414 Length=97726 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 242943 ATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAAC 243002 ||| | ||||| ||| | || || |||||||| |||||||||||| |||| || | | Sbjct 41123 ATGCGCTTCCCAGACCGCACGACGCCGATCGGGCAGATGATCAACGCGTATCTCACCGGC 41182 Query 243003 AAGAGCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAAGCC 243062 |||||| | || || |||||| | ||||| || ||||| || ||||| |||||||| Sbjct 41183 GCGAGCGAGCAAGAGGACCACGTCATTCACCTGCTCTTCTCTGCAAACCGCTGGGAAGCT 41242 Query 243063 GC 243064 || Sbjct 41243 GC 41244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944296102719760