Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10-
07] 3,651 sequences; 45,838,930 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq3000 123 5e-23
seq703 87.8 4e-12
>seq3000
Length=185088
Score = 123 bits (136), Expect = 5e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561
|||||||| || || || || | ||| ||||| ||| | |||||| |||| |
Sbjct 10100 ATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCT 10041
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
||| ||||||||||| | |||||| | ||||||||||| ||||| || |||||| |
Sbjct 10040 CTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTG 9981
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
| | ||||| || | |||| |||||||| | |||||||| | ||| ||||||
Sbjct 9980 CTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAG 9921
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||| ||||| | || || || ||||||||||| ||||| || |||| || ||
Sbjct 9920 AACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 9865
>seq703
Length=6306
Score = 87.8 bits (96), Expect = 4e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240
|||||| || |||||||| |||| || || ||||| || || | ||||| | ||
Sbjct 2195 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 2136
Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299
||| || |||| | ||||||||||||| |||||||||||| | | || | ||| |
Sbjct 2135 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 2077
Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354
| ||||| || |||| || ||||| || || || | ||||||||||||||
Sbjct 2076 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 2022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102828408996850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |