Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3000 107 2e-18 >seq3000 Length=185088 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || |||| || |||| |||||| || | || ||||| |||| || | | | Sbjct 10093 CCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTG 10034 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | ||||||||| | ||| | |||||||||| || || || ||||||||||| || Sbjct 10033 GCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGG 9974 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGA---ATCCATTCGAGTTTATGAACAACA 47529 ||| | ||||| ||| ||| | || | || ||||| || ||| | |||| Sbjct 9973 CGCTGGGCAA---CAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACA 9917 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||| | |||||||| ||||| |||||||||||||| || || || Sbjct 9916 TCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 9868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479099332240