Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3000 131 3e-25 seq3378 123 5e-23 >seq3000 Length=185088 Score = 131 bits (144), Expect = 3e-25 Identities = 333/510 (65%), Gaps = 7/510 (1%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| |||||| | |||||| | | ||| | | || || | Sbjct 10369 GCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCG 10310 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 ||| || | || || || || || ||||| ||||| |||||||| || || || Sbjct 10309 CATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCT 10250 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992 |||| |||||||||||| || || |||||| || || ||||| ||||| |||||| Sbjct 10249 CCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTG-ACTTTCTCCAATGAGCTC 10191 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | || ||||| | || | || || ||||||||||| | | || ||| | Sbjct 10190 ATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCG---CACATC 10134 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 || || | || |||| | | ||||||| |||||||| ||||||||| Sbjct 10133 AAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAG 10074 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 |||||||| | | ||||||||| | |||||| Sbjct 10073 AAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATG 10014 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231 |||| ||||| |||| || || |||| ||||| ||| | |||||| | | Sbjct 10013 TGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGC-GCTGGGCAACAAGAAGTA 9955 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||||| || | ||||| |||||||| ||||| ||||| ||| | | || ||||| || Sbjct 9954 CTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAA 9895 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || ||| | || || ||||| || Sbjct 9894 CTTCTTCGAGAAGCGCGTTGGTGACTACCA 9865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || ||||||||||| Sbjct 10762 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 10703 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GCTC-TATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || | | | | ||||||| || | ||| || Sbjct 10702 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGC-GCTTCTTCATCTC 10644 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || || ||||| || || ||||||||||| || ||| | Sbjct 10643 CCACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACG 10584 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || ||||||||||||||||| Sbjct 10583 CTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 10530 >seq3378 Length=101758 Score = 123 bits (136), Expect = 5e-23 Identities = 668/1043 (64%), Gaps = 45/1043 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||| ||||| ||||| |||| || ||||||||| ||| Sbjct 62539 GTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAATGTTCAGCTGCTTGGCCTCAGGA 62598 Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| ||| |||||||| || | | ||||| |||| || || || | || || | | Sbjct 62599 GAATCGAACGGCATACGAAG-AGCAAGGAAAG-CGTCAGCAAGACCGTTGACACCAACAG 62656 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGAC 221592 |||| || | ||| | | ||||| | || |||||||| || || || ||| | Sbjct 62657 CGATAGGACGGTGACGCATGTTGCT--CTTCCTGGCTTCTGGAACTGGGTAGTGGTTAAT 62714 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | ||||| || ||| | || | | |||||| ||||||| Sbjct 62715 GTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAACCTCGTGAAGCTTCT---- 62770 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 |||| | | | | || || | || || || || | | ||| || | Sbjct 62771 --TGAAGTCGTA---GACACCTTCCTCGACA---TCGACGAAGGTGGGTAGCGCCAGAGA 62822 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 || | ||| ||||| || || || || ||| |||| | ||| || || || Sbjct 62823 CGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAG 62882 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || ||||| || |||| || || || |||||| ||| ||| | |||| Sbjct 62883 GTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 62941 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| | ||| ||||| || || || | ||| ||| | || ||| || |||||| | Sbjct 62942 TGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCT 63001 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAG 221947 |||| || | || ||| || ||| | |||||| ||| |||||| | ||| || Sbjct 63002 -TCTGAGCACGGACAGTC-TCGCGACCACGACCCTC---CTTCTCATACTGCTCGTAGAG 63056 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | || | ||||| || | ||| | || || || ||| | || ||||| Sbjct 63057 GGCCT--CGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATG 63114 Query 222008 AGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || ||||| ||| ||| | | || | || ||||||||| || || ||||| || || Sbjct 63115 AGGGTCCAGGTGCC-GTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 63173 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || | | || |||||| |||| ||| || | || || | ||| Sbjct 63174 GTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAA 63233 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 || | ||||| ||||||||||| || |||| ||| | ||| ||||| |||||||| Sbjct 63234 GCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTT 63293 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| | || | | ||| | |||| | | || || | || | || | Sbjct 63294 ACCACCCTGGT-CAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGC 63352 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-TACTG 222301 ||||| ||||| || || |||||| || ||| | | ||| || Sbjct 63353 CGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGT 63412 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 |||| ||||||||||||||| || ||||||||||| ||| |||| || ||||| Sbjct 63413 TCAGA----CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCG 63468 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || |||||||| | || | || || ||||| | || ||||| Sbjct 63469 TAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGC 63528 Query 222422 TTGGTGGAACAGGCGTTAAACAG 222444 |||| | || || || ||||| Sbjct 63529 TTGGGAGTACCAGCATTGAACAG 63551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802409845440