Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10-
07] 3,651 sequences; 45,838,930 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3000 131 3e-25
seq3378 123 5e-23
>seq3000
Length=185088
Score = 131 bits (144), Expect = 3e-25
Identities = 333/510 (65%), Gaps = 7/510 (1%)
Strand=Plus/Minus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873
||||||||| |||||| |||||| | |||||| | | ||| | | || || |
Sbjct 10369 GCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCG 10310
Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933
||| || | || || || || || ||||| ||||| |||||||| || || ||
Sbjct 10309 CATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCT 10250
Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992
|||| |||||||||||| || || |||||| || || ||||| ||||| ||||||
Sbjct 10249 CCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTG-ACTTTCTCCAATGAGCTC 10191
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052
||| | || ||||| | || | || || ||||||||||| | | || ||| |
Sbjct 10190 ATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCG---CACATC 10134
Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112
|| || | || |||| | | ||||||| |||||||| |||||||||
Sbjct 10133 AAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAG 10074
Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172
|||||||| | | ||||||||| | ||||||
Sbjct 10073 AAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATG 10014
Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231
|||| ||||| |||| || || |||| ||||| ||| | |||||| | |
Sbjct 10013 TGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGC-GCTGGGCAACAAGAAGTA 9955
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
||||| || | ||||| |||||||| ||||| ||||| ||| | | || ||||| ||
Sbjct 9954 CTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAA 9895
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| || ||| | || || ||||| ||
Sbjct 9894 CTTCTTCGAGAAGCGCGTTGGTGACTACCA 9865
Score = 89.7 bits (98), Expect = 1e-12
Identities = 163/234 (70%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || |||||| || || |||||||||||
Sbjct 10762 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 10703
Query 25537 GCCAAGGACATGGACGGCTGGTAC--GCTC-TATCCAAAGACGAGCAGCATTTTC-TCAA 25592
||||||| | ||| |||| || || | | | | ||||||| || | ||| ||
Sbjct 10702 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGC-GCTTCTTCATCTC 10644
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| | || ||||| || || ||||| || || ||||||||||| || ||| |
Sbjct 10643 CCACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACG 10584
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | || || ||| | |||||| || |||||||||||||||||
Sbjct 10583 CTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 10530
>seq3378
Length=101758
Score = 123 bits (136), Expect = 5e-23
Identities = 668/1043 (64%), Gaps = 45/1043 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476
|| || |||||||||||||| ||||| ||||| |||| || ||||||||| |||
Sbjct 62539 GTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAATGTTCAGCTGCTTGGCCTCAGGA 62598
Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534
||| ||| |||||||| || | | ||||| |||| || || || | || || | |
Sbjct 62599 GAATCGAACGGCATACGAAG-AGCAAGGAAAG-CGTCAGCAAGACCGTTGACACCAACAG 62656
Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGAC 221592
|||| || | ||| | | ||||| | || |||||||| || || || ||| |
Sbjct 62657 CGATAGGACGGTGACGCATGTTGCT--CTTCCTGGCTTCTGGAACTGGGTAGTGGTTAAT 62714
Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652
||| || | ||||| || ||| | || | | |||||| |||||||
Sbjct 62715 GTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAACCTCGTGAAGCTTCT---- 62770
Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
|||| | | | | || || | || || || || | | ||| || |
Sbjct 62771 --TGAAGTCGTA---GACACCTTCCTCGACA---TCGACGAAGGTGGGTAGCGCCAGAGA 62822
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
|| | ||| ||||| || || || || ||| |||| | ||| || || ||
Sbjct 62823 CGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAG 62882
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831
|||| || ||||| || |||| || || || |||||| ||| ||| | ||||
Sbjct 62883 GTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 62941
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||| | ||| ||||| || || || | ||| ||| | || ||| || |||||| |
Sbjct 62942 TGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCT 63001
Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAG 221947
|||| || | || ||| || ||| | |||||| ||| |||||| | ||| ||
Sbjct 63002 -TCTGAGCACGGACAGTC-TCGCGACCACGACCCTC---CTTCTCATACTGCTCGTAGAG 63056
Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007
|| | | || | ||||| || | ||| | || || || ||| | || |||||
Sbjct 63057 GGCCT--CGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATG 63114
Query 222008 AGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
|| ||||| ||| ||| | | || | || ||||||||| || || ||||| || ||
Sbjct 63115 AGGGTCCAGGTGCC-GTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 63173
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| || || || | | || |||||| |||| ||| || | || || | |||
Sbjct 63174 GTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAA 63233
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
|| | ||||| ||||||||||| || |||| ||| | ||| ||||| ||||||||
Sbjct 63234 GCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTT 63293
Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245
|||||||| | || | | ||| | |||| | | || || | || | || |
Sbjct 63294 ACCACCCTGGT-CAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGC 63352
Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-TACTG 222301
||||| ||||| || || |||||| || ||| | | ||| ||
Sbjct 63353 CGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGT 63412
Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
|||| ||||||||||||||| || ||||||||||| ||| |||| || |||||
Sbjct 63413 TCAGA----CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCG 63468
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
||| ||||| || |||||||| | || | || || ||||| | || |||||
Sbjct 63469 TAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGC 63528
Query 222422 TTGGTGGAACAGGCGTTAAACAG 222444
|||| | || || || |||||
Sbjct 63529 TTGGGAGTACCAGCATTGAACAG 63551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928802409845440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |