Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3000 172 7e-37 seq659 147 3e-29 seq3413 116 5e-20 seq341 116 5e-20 seq3378 102 1e-15 >seq3000 Length=185088 Score = 172 bits (190), Expect = 7e-37 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| |||||| ||||| |||||||| | ||||||||| Sbjct 9858 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 9917 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| || ||||||| ||| | | || |||| | | Sbjct 9918 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 9977 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||||||||| || || ||||||||||||||||||||||| ||||||||||| | Sbjct 9978 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 10037 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || || || || | || | | ||||| |||||||||||||| |||||| ||| Sbjct 10038 AAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 10097 Query 868930 GATCT 868934 ||||| Sbjct 10098 GATCT 10102 Score = 109 bits (120), Expect = 7e-18 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || |||||||| ||||| ||| | |||| | | ||| Sbjct 10509 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 10568 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| |||||||||||| |||||||| Sbjct 10569 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 10628 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 ||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| | Sbjct 10629 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 10688 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | |||||| || ||||||| || ||||||||||| ||| Sbjct 10689 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 10748 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 10749 TACATCTGCCA 10759 Score = 87.8 bits (96), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 9/156 (6%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||||||||| |||||||||||||| || |||| | |||| ||| ||| ||| Sbjct 10213 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 10272 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||||||||| || || | ||||| ||| || ||| |||||| | |||| Sbjct 10273 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 10326 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | |||||| | |||||||||||||| ||| Sbjct 10327 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 10362 >seq659 Length=68631 Score = 147 bits (162), Expect = 3e-29 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||||||||| ||| | || |||||| |||| |||||| ||||||||||| Sbjct 35105 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 35164 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| ||||| |||||||||||||| || |||||| || Sbjct 35165 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 35215 >seq3413 Length=97877 Score = 116 bits (128), Expect = 5e-20 Identities = 141/190 (74%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 29978 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 29919 Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084 ||||||||||||| | ||| ||| || ||| | || | |||| | | ||| || Sbjct 29918 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 29862 Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 |||| || | || |||||| ||| |||||||||| ||| || || || || || | Sbjct 29861 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 29802 Query 1727145 CCAGCAGCCG 1727154 ||||||| || Sbjct 29801 CCAGCAGACG 29792 >seq341 Length=154331 Score = 116 bits (128), Expect = 5e-20 Identities = 254/370 (69%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732 |||| ||| ||||| || | |||||| | |||||||| || || || | | | Sbjct 22970 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 23028 Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||| |||||||||| || | | ||| | || |||| |||||||||| Sbjct 23029 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 23088 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 | |||||||||||| ||||||||||| | |||||| | | |||||| || | || Sbjct 23089 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 23148 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910 | ||| | | | | || | |||| ||| | |||| || | | ||| || | | Sbjct 23149 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 23203 Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970 | ||| |||| | |||||| | || || | | | | | || ||||| Sbjct 23204 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 23263 Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030 |||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||| Sbjct 23264 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 23323 Query 1727031 CGCGCATGAC 1727040 ||||||| || Sbjct 23324 CGCGCATCAC 23333 Score = 100 bits (110), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100 |||||||||| |||||||| ||| || |||||| | ||||| || | ||||| Sbjct 26873 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 26928 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || |||||||||||||||||| | || || ||| ||||| ||||||||| || || Sbjct 26929 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 26988 Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184 || ||||| || || ||||||||| Sbjct 26989 GCGACCAAAGGGTTTGAGATTGGC 27012 Score = 91.5 bits (100), Expect = 2e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178 |||||| ||| ||| ||||||| || ||| || | | || ||||| | || || | Sbjct 26192 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 26250 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 |||| || || || ||||| || || || |||| | ||||||| ||||| ||| Sbjct 26251 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 26310 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 || |||||| |||||||||||||||||| |||| |||| || ||| | || ||| Sbjct 26311 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACCCCTATCG 26370 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355 |||| |||| || ||||||| |||| |||||| | ||| | | || Sbjct 26371 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 26430 Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 || || |||| ||||| || | || ||| ||| || |||||| |||||||| Sbjct 26431 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 26489 >seq3378 Length=101758 Score = 102 bits (112), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| | || |||||||| || | |||||||||| Sbjct 63300 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 63359 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| || || || | |||| ||| | ||| || | ||| || | || Sbjct 63360 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 63419 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | || || || || ||||||||||| ||||| Sbjct 63420 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 63479 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || || |||||||||| | ||| ||||| || Sbjct 63480 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 63515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106839581842367