Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3378 260 1e-64 seq3000 172 5e-38 seq3261 91.5 1e-13 >seq3378 Length=101758 Score = 260 bits (288), Expect = 1e-64 Identities = 1026/1591 (64%), Gaps = 47/1591 (3%) Strand=Plus/Plus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 ||||||| || ||||| || ||||||||||| ||||||||||| | ||| | | Sbjct 61927 GCAGCGGCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCG 61986 Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCG---GGTGCGGCACAAACAGATTAAACGAC 148055 ||||| ||| | ||| | || | ||| ||| | || | ||| | ||| Sbjct 61987 AAGTGCATCGAGG---TGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGAC 62043 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATC 148112 || || || |||||||| |||||||| |||||||| | || || || |||| Sbjct 62044 TGCGATTGATCGATGAACGCACCACGGTCGGCGGCCATCTGAACGATGGTGCGCTGGGAA 62103 Query 148113 TTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGC 148172 | ||||||| | |||||||| ||| |||||| | ||| || ||| | ||| || Sbjct 62104 ---AGCTCCCAGACGGTCTTGTAGAGCGCCTTGATGTCATCTGGGATGTTGGGGATCTGC 62160 Query 148173 TGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGC 148232 || | |||||| | |||| || | || ||| | || | | || ||| Sbjct 62161 TGAATAGAGCCGTTGGAGGCAATGATGCGGTTCTTCATCTGATCAGACCACAGTCCGAGG 62220 Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 || | ||||| | | || || | || || ||||| || || |||||||| || || Sbjct 62221 TCAACGAGGTCCTTCAGGAGCCACGGGTTGACAACCTGGAATTCACCGGCGAGGACACGG 62280 Query 148293 CGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || ||| || | ||| ||| | || || || |||| ||| ||| | |||||| Sbjct 62281 CG-AGAGTAGATGTTTGAGGTATAAGGCTCGAAACACTCATTGAAGCCGAGAATCTGGCT 62339 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||||| || |||||||| || || |||| |||||||| |||| | | || Sbjct 62340 GGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAGGAGTTGCGGGTACCGTGCTGGGCAAT 62399 Query 148412 TTTGCGCTTCAGAGCCG-CCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTC 148468 | | ||||| ||| | ||||||||||||| ||| | || ||| ||||||||||| Sbjct 62400 CTCGGCCTTCA-AGCTGTCCCAGTCCCAGAGGTCGGTG--GGGGTCTTATTCCACATGTC 62456 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 || |||||||| || || || |||||||||| | ||| ||| || |||| | Sbjct 62457 ATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGGGCCGTCCCT 62516 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || || || || ||| || ||| ||| || |||||| ||||| | Sbjct 62517 CTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAAT 62576 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 ||| ||| || ||| ||| |||||||||| || | || ||||| || Sbjct 62577 GTTCAGCTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGAAAGCGTCAGC 62636 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 ||| || | || || || | || || ||||| |||||| | || ||| Sbjct 62637 AAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTTGCTCTTCCTGGC-TTCTG 62695 Query 148709 GAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || | || |||||||| ||| |||||||||| ||||| || | ||||| |||| Sbjct 62696 GAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAA 62755 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTACGATGCATCGGTTCA 148818 | | ||| | || ||||| || | |||| |||| | | ||| | Sbjct 62756 CCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAAG-GTGGGT--A 62812 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 || | ||| |||| |||||||| || ||||| || ||| ||||||| ||||| | Sbjct 62813 GCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTT 62872 Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 || |||||| ||| || || ||| | |||||| || |||||||||| ||||| Sbjct 62873 CGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGC 62932 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GA 148995 | ||||||||||| |||| | || || ||||| ||||| | || | || | Sbjct 62933 AGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGT 62992 Query 148996 ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCG-TAGCGACCCTCCTGCTCGTATAAA 149054 ||| || | ||| || || || || | || |||||||||| ||| || Sbjct 62993 ACC---AGAGCTTCTGAGCACGGACAGTCT-CGCGACCACGACCCTCCTTCTCATACTGC 63048 Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114 || || |||||| |||| || ||| ||| | ||||| ||||||| || ||| Sbjct 63049 TCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGG 63108 Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174 |||||||| | ||| ||||| | | || |||||||| || |||||||| | |||| Sbjct 63109 CACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAG 63168 Query 149175 AGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTG 149234 || ||||| | ||||| || || || || || ||| || |||| | Sbjct 63169 AGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCG 63228 Query 149235 AGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC 149294 || | |||||| | || || ||||||||||| | ||| | |||| || || |||| Sbjct 63229 AGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGC 63288 Query 149295 TTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCA 149351 ||| || |||||||| |||| ||| | ||||||| |||| || | |||||| Sbjct 63289 TTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATG 63348 Query 149352 ATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGC 149411 | ||| || |||||||||||| | |||| ||||| || || | ||| Sbjct 63349 AGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGA 63408 Query 149412 ACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGA 149470 ||||| | ||||| || ||| || ||| ||||| || || ||| | || || Sbjct 63409 ACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTC-AGGGTGTC 63467 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATG 149501 |||||| ||||| ||||| || ||||||| Sbjct 63468 GTAGATACCCTCAATGCTATCCTCCTTCATG 63498 >seq3000 Length=185088 Score = 172 bits (190), Expect = 5e-38 Identities = 346/505 (69%), Gaps = 11/505 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || ||||| ||||| || ||||| || ||||| | | ||| ||||| | Sbjct 9864 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTC 9923 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| ||| ||| |||| ||| | ||||| | || ||||| Sbjct 9924 CATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAG 9983 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||||| ||||||| || | |||||||||||| || | | Sbjct 9984 GCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGT-CGCGTTCATGCCAAGAAGAG 10042 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGA--ACAT 120587 | || || | || ||||| ||||||||||| || || || ||||| ||| | | Sbjct 10043 CGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCT 10102 Query 120588 GGCGAGCATAGT-GTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | | | | | ||| |||| || | || |||| ||| | | |||||| | Sbjct 10103 TCTCAACGGATTCGGGGCTGGGCTTC--GACTT-GATGTGCG---AGAACAGCAGGCAGG 10156 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 | ||||| || |||| |||||| ||||| || || ||||| ||| || |||| || | Sbjct 10157 CGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAG 10216 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| ||| | |||||| |||| |||| ||| || ||| ||||| | | Sbjct 10217 GCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATAC 10276 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| ||| || || || | | |||| || || |||| ||||| | ||||| Sbjct 10277 CCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCC 10336 Query 120827 ACTTCATGGCCCACTCGGCCTTTTT 120851 | | |||||| |||||||| || Sbjct 10337 AACGAAGGGCCCAGTCGGCCTTCTT 10361 >seq3261 Length=93105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | |||||||||||||||| Sbjct 35741 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCGAGCTGCTTGC 35799 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570 ||||| | || || ||||||||||| || || ||||| |||||||| || Sbjct 35800 CCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGT 35848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398737883240