Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3000 82.4 7e-11 >seq3000 Length=185088 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110032 CTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATT 110091 || ||| || || || || || ||||| || || || ||||| | ||| || || || | Sbjct 9864 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTC 9923 Query 110092 CATAAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAA 110151 ||| || ||||| || ||| | ||| ||| || | || ||||| | | |||| Sbjct 9924 CATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAG 9983 Query 110152 TCGATCCGCCACAAATTCAATATACTCGCACATGGACTGTA-CGTTCATGCCTAACATGG 110210 || || || || || || || |||| ||||||| | || |||||||||| | | | Sbjct 9984 GCGGTCAGCAACGAACTCGATGTACTGGCACATG-AGAGTCGCGTTCATGCCAAGAAGAG 10042 Query 110211 CAACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTC 110259 | || || |||||| || | || ||||| || || ||||||||||| Sbjct 10043 CGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTC 10091 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 110714 TCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTTTA 110773 |||| || || | |||||||||| |||| | || ||||| || ||||| ||||| Sbjct 10587 TCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAG 10646 Query 110774 AGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACATG 110833 | ||||| || || | ||||| || ||||||||||| | || |||||||| | Sbjct 10647 ATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGA 10706 Query 110834 TCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAA 110888 || ||||| || | ||||| | || | | |||||||||||| ||||||| Sbjct 10707 TCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAAA 10761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445074087004320