Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3378 143 3e-29 seq1338 95.1 1e-14 >seq3378 Length=101758 Score = 143 bits (158), Expect = 3e-29 Identities = 1041/1661 (63%), Gaps = 37/1661 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| ||||| || ||||| | |||||||||||||| || |||||||| | Sbjct 61910 TGAACTGGATGGGAGCAGCAGCGGCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGC 61969 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | ||||||| || | ||||| |||| | |||| | || || | |||| Sbjct 61970 CAAGCTTCCAACCAGCGAAGTGCATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGT 62029 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || || | || |||||||||||||| || || || || ||||| | || | Sbjct 62030 GGATATTGAGGGACTGCGATTGATCGATGAACGCACCACGGTCGGCGGCCATCTGAACGA 62089 Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 | | | || | | ||||| || ||| ||||||| ||| || |||||||||| Sbjct 62090 --TGGTGCG-CTGGGAAAGCTCCCAGACGGTCTTGTAGAGCGCCTTGATGTCATCTGGGA 62146 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTG 118101 | | ||| | || || || || | | ||| | | |||||| | | | Sbjct 62147 TGTTGGGGATCTGCTGAATAGAGCCGTTGGAGGCAATGATGCGGTTCTTCATCTGATCAG 62206 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||| || || | | ||| |||| || ||| | |||||||| || |||| Sbjct 62207 ACCACAGTCCGAGGTCAACGAGGTCCTTCAGGAGCCACGGGTTGACAACCTGGAATTCAC 62266 Query 118162 CCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 118220 | |||||| || | ||| ||||| || | || || ||||| || ||||||||| | Sbjct 62267 CGGCGAGGACACGGCG-AGAGTAGATGTTTGAGGTATAAGGCTCGAAACACTCATTGA-A 62324 Query 118221 CCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279 || ||| | ||||| | ||||| |||||||| || || | ||| | | ||| ||| Sbjct 62325 GCCGAGAATCTGGCTGGTCGAGGCAGTGGGCATTGGAGCAACGAGCAAGGAGTTGCGGGT 62384 Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGC-GTCCCAGTCGTAGTTGAGCTTTGTCTCCC 118338 ||| | | ||| |||| | ||| ||||||||| || | | | | Sbjct 62385 ACCGTGCTGGGCAATCTCGGCCTTCA-AGCTGTCCCAGTCCCAGAGGTCGGTGGGGGTCT 62443 Query 118339 CCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 118398 | |||||| ||| | || || || || |||||||| || |||| || || || | Sbjct 62444 TATTCCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGT 62503 Query 118399 ATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455 | ||||| || || || | || ||| || ||| || ||||| || || | Sbjct 62504 AAGGGCCGTCCCTCTTGGCGAGCTCAACCGAG---GCAGTGAGAGCAGCGTGGTAGATAG 62560 Query 118456 TTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA 118515 | || || || || |||| ||||||||| ||||| |||| | || Sbjct 62561 TCTCGAAGATTTGAATGTTCAGCTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAG 62620 Query 118516 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 118575 || || | || || ||||| | |||||| | | || || || || | ||| || Sbjct 62621 CAAGGAAAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTTGC 62680 Query 118576 ACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 118634 ||||| || ||| | | || || || | || || | | | || ||||| ||| Sbjct 62681 TCTTCCTGGCT-TCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATTCTTG 62739 Query 118635 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC----AAAACTGCGAGTCTCTTC 118690 | |||| || | || |||||||| | | | || | | || | ||| | Sbjct 62740 ACAAGCACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTC----CTCGAC 62795 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 || ||| | | || || || | ||||| | || ||||||| | ||||| | | Sbjct 62796 ATCGACGAAGGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGC 62855 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 |||||||| | ||||| ||||| ||| || || ||||||||| | |||||| || Sbjct 62856 GGTGTACTCGACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTG 62915 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 || ||| ||| || |||||||| | |||| | || | || || || || Sbjct 62916 GTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTG 62975 Query 118871 GGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT 118929 || || ||| || || | ||||| | || | ||| | ||||| || | || |||| Sbjct 62976 GGCCTCGAGGATCGCGTACCAGAGCTTCTG-AGCACGGACAGTCTCGCGACCACGACCCT 63034 Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989 | | ||| |||| ||||||||| || || || ||||| | | || | || || | Sbjct 63035 CCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAG 63094 Query 118990 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 119049 | || | ||||| | ||| | ||| || || |||||| ||||||||||||| Sbjct 63095 GGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGA 63154 Query 119050 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 119109 | || || |||||||| || |||| || || ||| |||| | || || | || || | Sbjct 63155 GATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGT 63214 Query 119110 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 119169 | ||| | || | |||| | || ||| || |||||||| || ||||| | |||| Sbjct 63215 TCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGA 63274 Query 119170 TTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 | || || |||| |||||| || || | |||||| ||| | |||| Sbjct 63275 AAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACAC 63334 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT--TATT 119284 | ||||| || |||| || | | ||| || || || ||| | || | | Sbjct 63335 GGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAAT--GTAGCTGCCAGT 63392 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 ||| | || ||| | || || ||| ||||| || || ||| ||||| || || Sbjct 63393 GGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 63452 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | | || || ||||||| || || || || |||| | ||||||||||||| Sbjct 63453 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 63512 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | || |||||| |||| |||||||| ||||| |||| Sbjct 63513 AGAAGCCAACTGAGGCTTGGGAGTACCAGCATTGAACAGAG 63553 >seq1338 Length=59038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAAC 14292 || |||| || || |||||||||||||||| || || || || | ||| || || Sbjct 2525 TTGCCGATAGCATCGATTTCATCGATGAAAATAATGCAGGGGGTGCTCTTC-CGCGCTGT 2583 Query 14293 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 14352 | | || | || || ||||| || ||||||||||| ||||||||||| || | || Sbjct 2584 TGCGAAAAGGTCACGGACTCTAGAGGGGCCGACACCCACGAACATCTCCACGAACTCGGA 2643 Query 14353 GGCG-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 || ||| | || ||| || || | ||||||||| || |||| ||||| | | Sbjct 2644 ACCGCTAACGCT-GAAGAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACG 2702 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 |||| || || || || |||| ||||| ||||||||| ||||| ||||||| Sbjct 2703 TCTTACCGGTACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACC 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406976163560