Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3378 138 1e-27 seq3000 95.1 1e-14 >seq3378 Length=101758 Score = 138 bits (152), Expect = 1e-27 Identities = 257/373 (69%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || |||| |||| || ||||| ||||| || ||| || | || || || | ||| Sbjct 63277 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 63218 Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724 ||||| || | ||||||| |||| | || || || |||| ||||||||||||||| Sbjct 63217 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 63160 Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784 ||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || | Sbjct 63159 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 63100 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 | |||||||| |||| | | |||||||| || || ||||| ||| |||| || Sbjct 63099 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 63040 Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903 | | || ||||| | | ||| || | ||| | || | | ||| | || || ||| Sbjct 63039 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 62981 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || | || ||| || |||| || | |||| | ||||| ||| ||| |||| |||| Sbjct 62980 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 62921 Query 104964 GTAATCAAAAGAA 104976 | || || ||||| Sbjct 62920 GCAACCAGAAGAA 62908 >seq3000 Length=185088 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| ||| | || || ||| || ||||||||||||||| || || ||| | | || Sbjct 10305 GCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCAT 10246 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || |||||||||||||| || |||||||| ||| | |||||||| ||||| ||||| Sbjct 10245 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTC 10186 Query 94926 TCGTGACGAGGG 94937 ||| || ||||| Sbjct 10185 TCGCGATGAGGG 10174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234181435240