Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3378 206 3e-48 >seq3378 Length=101758 Score = 206 bits (228), Expect = 3e-48 Identities = 344/491 (70%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||||| |||||||| | |||||| || | |||||||| | | |||||| Sbjct 63551 CTGTTCAATGCTGGTACTCCCAAGCCTCAGTTGGCTTCTTGCTTCCTCATCGACATGAAG 63492 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || || || || || |||||||| || || ||| |||||| ||||||||| Sbjct 63491 GAGGATAGCATTGAGGGTATCTACGACACCCTGAAGACCTGTGCCATGATCTCCAAGACC 63432 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGG 53471 | |||||||||||| | || | || | || ||||||| | |||| || | Sbjct 63431 GCCGGTGGTATCGGTCTGAAC-GTTC-ACCGCATCCGTGCCACTGGCAGCTACATTGCCG 63374 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || |||||| | | | || || | ||||||||||| || | ||||||||| |||| Sbjct 63373 GTACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCC 63314 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 | ||||| ||||||||||| |||||| || | |||||||||||||||||||||| Sbjct 63313 GCTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGT 63254 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 |||| || || | | |||||||| || ||| ||| || || | || ||| | | Sbjct 63253 GGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTC 63194 Query 53652 GCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 || |||||||| || ||| ||||| |||||||| || ||||||||| | || ||| Sbjct 63193 GCGCTCGTGACCTTTTCTAC-GCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAG 63135 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTAC 53770 || ||| ||| ||| |||||||| ||||||||||| || || | ||||| Sbjct 63134 CAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTAT 63075 Query 53771 GGTGAGGAGTT 53781 |||||||| || Sbjct 63074 GGTGAGGAATT 63064 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | | ||| ||| || |||||| || | ||| | | || | ||| | Sbjct 62134 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 62075 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || |||||||||| |||||| || || ||||| || || ||| |||| || | || Sbjct 62074 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 62015 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | |||||||||||| || |||||| || |||||||| || | Sbjct 62014 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 61955 Query 55908 TGTACTATCTGCGGACCC 55925 ||||||| || || |||| Sbjct 61954 TGTACTACCTCCGCACCC 61937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191026429800