Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10-
07] 3,651 sequences; 45,838,930 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3378 239 5e-58
seq3261 102 9e-17
seq2601 98.7 1e-15
>seq3378
Length=101758
Score = 239 bits (264), Expect = 5e-58
Identities = 738/1121 (66%), Gaps = 43/1121 (4%)
Strand=Plus/Plus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||| | |||| || |||| ||||| || ||| |||||| ||||| ||
Sbjct 62448 CCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGG 62507
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
||| ||| ||||||| |||||| ||| | | || || ||||| || || ||| ||
Sbjct 62508 GCCGTCCCTCTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAA 62567
Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719
|| |||||| | || | ||| || ||||||| || | | | ||
Sbjct 62568 GATTTGAATGTTCAG-CTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGA 62626
Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779
| ||||||| || || | || || | ||||| || ||||| ||| |||| | ||
Sbjct 62627 AAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTT-GCTCTTC 62685
Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AAC 80837
| ||| || |||| |||||| |||| | || |||| |||||| || | || ||
Sbjct 62686 CTGGCTTCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATT-CTTGACAAG 62744
Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG--TTCCCCTTCA----CAAA 80891
||| | ||||| || ||||| |||| |||||| | |||| | || | ||
Sbjct 62745 CACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAA 62804
Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951
| || || ||| ||||| | |||||||| || || || |||| | | || ||||
Sbjct 62805 GGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTC 62864
Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
||||||||| ||||| || || ||| || || ||||| |||||||| |||
Sbjct 62865 GACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTT 62924
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
| |||||| ||||||||| ||||| | ||| ||||||| |||||||| | || |||
Sbjct 62925 GCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAG 62984
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||| |||| ||| | || | || ||| || ||| || || | ||||
Sbjct 62985 GATCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCATA 63044
Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191
|| |||| | ||||| | |||| | | || | || | |||||||||||
Sbjct 63045 CTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTT 63104
Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGG 81248
||||||||| ||| ||| |||| |||| ||| ||| ||||||||| || ||
Sbjct 63105 AGGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGG 63161
Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306
|||||||| ||| ||| ||||| || |||||| ||||||| | || |||||
Sbjct 63162 AATCCAGAGAGCGTAGAAAAGGTCACG--AGCGCGAACCTCCTCTTTTCCGTGGTTCTTA 63219
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | ||||||||| | || || |||||||| ||||| || || | ||||| |
Sbjct 63220 CGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCA 63279
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| ||| | |||||||||| ||||| |||||||| ||| | ||||| | |
Sbjct 63280 CCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGC 63339
Query 81424 ATAGGGATGATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481
|||||||||| || | || ||| ||||| ||||| | || || |||| |
Sbjct 63340 ATAGGGATGAGGCCGT-TG-CTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCAC 63397
Query 81482 GCACCTTGCTGATTGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| | ||| | |||| |||||||| ||||| | ||| || ||| |||||
Sbjct 63398 GGA---TGCGG--TGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 63452
Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596
|||| ||| || || || ||||| |||||||| | |||||||| | | ||| ||
Sbjct 63453 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 63512
Query 81597 GCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635
| || |||||| || ||| || |||||||||||
Sbjct 63513 AGAAGCCAACTGAGG--CTTGGGAGTACCAGCATTGAACAG 63551
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| |||||| || | ||||
Sbjct 61933 GCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGC 61992
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || ||| ||| | | ||||||| || |||| ||| || || ||||| || |||
Sbjct 61993 ATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGACTGCGATTGA 62052
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
|||||| || ||||| || || |||||
Sbjct 62053 TCGATGAACGCACCACGGTCGGCGGCCAT 62081
>seq3261
Length=93105
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||| ||||||
Sbjct 35845 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35786
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||| || || || | ||||| || |||| ||||| || || ||||| || || |
Sbjct 35785 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35726
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 35725 CGCCTGCGTGGTGG 35712
>seq2601
Length=41645
Score = 98.7 bits (108), Expect = 1e-15
Identities = 269/412 (65%), Gaps = 0/412 (0%)
Strand=Plus/Minus
Query 31991 TCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACA 32050
||||||| || ||||||||| | ||| ||||| |||||||||| ||| || ||||
Sbjct 17976 TCAAGCCGGGTCAACGCAAGGTGCTTTACACCTGCTTCAAGAAGAATCTGAGGAAGGACA 17917
Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110
| ||||| |||| | || | || | || || |||| | |||| || |
Sbjct 17916 TCAAGGTCAACGAGCTCGCCGGTTTTGTTGGAGGCTTGACCAACTATGCCTACGGTGATG 17857
Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170
| || |||||| || ||||| || ||||| ||||| || || | || || | |
Sbjct 17856 CCTCACTCCAGCAAACGATTGTTGGTCTGGCTCAAAACTTCGTTGGCTCCAACAATATCA 17797
Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230
| || || ||||| || | || || | || || || || | |||||||| |
Sbjct 17796 ATTTGCTTGAGCCTAGCGGTAACTTCGGTTCTCGTATCCAGGGCGGTAGCGATGCTGCCA 17737
Query 32231 GCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290
|| |||||||||| | ||| || || | || | || || ||||| || || |
Sbjct 17736 GCGCCCGTTACATTTACACGCGACTTTCTCCGCTTGCCCGTAAACTTTTCCACGTATCCG 17677
Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350
| || || |||| || || || |||||||| ||| ||||||| | |||
Sbjct 17676 ATGAGCCGCTGCTTGAGCACGATCAGGATGACGGAAAGCCAATCGAGCCAACCATGTACG 17617
Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
||| | |||||||||||| | |||||||| || || || ||||| || ||
Sbjct 17616 TTCCTATTCTTCCGATGATCCTTGTGAACGGCGCGGACGGTATCGGCACTGG 17565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570284372459120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |