Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3378 239 5e-58 seq3261 102 9e-17 seq2601 98.7 1e-15 >seq3378 Length=101758 Score = 239 bits (264), Expect = 5e-58 Identities = 738/1121 (66%), Gaps = 43/1121 (4%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||| | |||| || |||| ||||| || ||| |||||| ||||| || Sbjct 62448 CCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGG 62507 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||| ||| ||||||| |||||| ||| | | || || ||||| || || ||| || Sbjct 62508 GCCGTCCCTCTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAA 62567 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || |||||| | || | ||| || ||||||| || | | | || Sbjct 62568 GATTTGAATGTTCAG-CTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGA 62626 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | ||||||| || || | || || | ||||| || ||||| ||| |||| | || Sbjct 62627 AAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTT-GCTCTTC 62685 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AAC 80837 | ||| || |||| |||||| |||| | || |||| |||||| || | || || Sbjct 62686 CTGGCTTCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATT-CTTGACAAG 62744 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG--TTCCCCTTCA----CAAA 80891 ||| | ||||| || ||||| |||| |||||| | |||| | || | || Sbjct 62745 CACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAA 62804 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 | || || ||| ||||| | |||||||| || || || |||| | | || |||| Sbjct 62805 GGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTC 62864 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||||||||| ||||| || || ||| || || ||||| |||||||| ||| Sbjct 62865 GACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTT 62924 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 | |||||| ||||||||| ||||| | ||| ||||||| |||||||| | || ||| Sbjct 62925 GCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAG 62984 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||| |||| ||| | || | || ||| || ||| || || | |||| Sbjct 62985 GATCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCATA 63044 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 || |||| | ||||| | |||| | | || | || | ||||||||||| Sbjct 63045 CTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTT 63104 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||||||||| ||| ||| |||| |||| ||| ||| ||||||||| || || Sbjct 63105 AGGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGG 63161 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306 |||||||| ||| ||| ||||| || |||||| ||||||| | || ||||| Sbjct 63162 AATCCAGAGAGCGTAGAAAAGGTCACG--AGCGCGAACCTCCTCTTTTCCGTGGTTCTTA 63219 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | ||||||||| | || || |||||||| ||||| || || | ||||| | Sbjct 63220 CGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCA 63279 Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || ||| | |||||||||| ||||| |||||||| ||| | ||||| | | Sbjct 63280 CCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGC 63339 Query 81424 ATAGGGATGATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481 |||||||||| || | || ||| ||||| ||||| | || || |||| | Sbjct 63340 ATAGGGATGAGGCCGT-TG-CTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCAC 63397 Query 81482 GCACCTTGCTGATTGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | | ||| | |||| |||||||| ||||| | ||| || ||| ||||| Sbjct 63398 GGA---TGCGG--TGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 63452 Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596 |||| ||| || || || ||||| |||||||| | |||||||| | | ||| || Sbjct 63453 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 63512 Query 81597 GCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635 | || |||||| || ||| || ||||||||||| Sbjct 63513 AGAAGCCAACTGAGG--CTTGGGAGTACCAGCATTGAACAG 63551 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| |||||| || | |||| Sbjct 61933 GCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGC 61992 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || ||| ||| | | ||||||| || |||| ||| || || ||||| || ||| Sbjct 61993 ATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGACTGCGATTGA 62052 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 |||||| || ||||| || || ||||| Sbjct 62053 TCGATGAACGCACCACGGTCGGCGGCCAT 62081 >seq3261 Length=93105 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 35845 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35786 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| || || ||||| || || | Sbjct 35785 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35726 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 35725 CGCCTGCGTGGTGG 35712 >seq2601 Length=41645 Score = 98.7 bits (108), Expect = 1e-15 Identities = 269/412 (65%), Gaps = 0/412 (0%) Strand=Plus/Minus Query 31991 TCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACA 32050 ||||||| || ||||||||| | ||| ||||| |||||||||| ||| || |||| Sbjct 17976 TCAAGCCGGGTCAACGCAAGGTGCTTTACACCTGCTTCAAGAAGAATCTGAGGAAGGACA 17917 Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 | ||||| |||| | || | || | || || |||| | |||| || | Sbjct 17916 TCAAGGTCAACGAGCTCGCCGGTTTTGTTGGAGGCTTGACCAACTATGCCTACGGTGATG 17857 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 | || |||||| || ||||| || ||||| ||||| || || | || || | | Sbjct 17856 CCTCACTCCAGCAAACGATTGTTGGTCTGGCTCAAAACTTCGTTGGCTCCAACAATATCA 17797 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 | || || ||||| || | || || | || || || || | |||||||| | Sbjct 17796 ATTTGCTTGAGCCTAGCGGTAACTTCGGTTCTCGTATCCAGGGCGGTAGCGATGCTGCCA 17737 Query 32231 GCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290 || |||||||||| | ||| || || | || | || || ||||| || || | Sbjct 17736 GCGCCCGTTACATTTACACGCGACTTTCTCCGCTTGCCCGTAAACTTTTCCACGTATCCG 17677 Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350 | || || |||| || || || |||||||| ||| ||||||| | ||| Sbjct 17676 ATGAGCCGCTGCTTGAGCACGATCAGGATGACGGAAAGCCAATCGAGCCAACCATGTACG 17617 Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| | |||||||||||| | |||||||| || || || ||||| || || Sbjct 17616 TTCCTATTCTTCCGATGATCCTTGTGAACGGCGCGGACGGTATCGGCACTGG 17565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284372459120