Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1419 125 5e-24 >seq1419 Length=54520 Score = 125 bits (138), Expect = 5e-24 Identities = 254/377 (67%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || |||||||| || ||| || ||||| |||| || |||||| Sbjct 42567 GTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCGGATTCCACGCGCTCATGATGAT 42508 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 ||| | || | || |||||| | | ||| | | | |||||||||||| || Sbjct 42507 GCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCACATCCGCCAGCTGATCCACACC 42448 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 ||| |||||| | || |||| |||||| || ||||| |||| ||| ||||| Sbjct 42447 TTGTCCCCTGTAGTCCGTCGTCGCGTCCACGTACTCAGCGCCGAAGTGCCGCCACTGGAA 42388 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 27587 ||||| || || || ||||| ||||| || | |||| || ||| |||| | || Sbjct 42387 GCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGCGAGAGGCCGACACTGTCGAGGAA 42328 Query 27588 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTT 27647 || | || ||||| | ||||||||||| || || ||||||||| || || Sbjct 42327 CTCGCGCGATCCGTTACCATCCCAGATCTTGACGCCAGCCTCGGAGAGAGGCTTCGATGA 42268 Query 27648 TGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTT 27707 |||| ||| ||| |||||||| || || | | |||||| | ||||| | ||| Sbjct 42267 TGTGCTGCCTGCGACAAACCACAGGAGTTCGGCTATGACGGCGCGCAGGAAGACGCGCTT 42208 Query 27708 GGTCGTGAGGAGGGGAA 27724 ||| |||||||| |||| Sbjct 42207 GGTGGTGAGGAGCGGAA 42191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369490758199781