Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4397 152 1e-31 seq3677 93.3 9e-14 >seq4397 Length=39634 Score = 152 bits (168), Expect = 1e-31 Identities = 189/256 (74%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || || | ||| ||||||||| | |||||| |||| ||||| Sbjct 29534 ATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCC-GTCGC 29592 Query 230446 -CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 ||| ||||||||||||| || ||| | ||||||||||| ||||| || |||||| | Sbjct 29593 TCTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCT 29652 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 | || || || || || |||| |||||||| | |||||||| | || ||||| Sbjct 29653 GCTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGA 29712 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 | ||| ||||| | || ||||| ||||||||||| ||||| || ||||||| |||| Sbjct 29713 GAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCAGAA 29772 Query 230625 GCCTGGTGTGATGAAG 230640 | | ||||| ||| || Sbjct 29773 GGCGGGTGTCATGGAG 29788 >seq3677 Length=33981 Score = 93.3 bits (102), Expect = 9e-14 Identities = 207/310 (67%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 319360 GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGA 319419 || |||| || | |||||| ||| | ||||| || ||| |||||||||| ||| Sbjct 24451 GTATCGGAGAGAGTGTAGTAGCTCTTGGCCTCGGGTTTCTGCTTGACGAACTCGGCCAGG 24392 Query 319420 TTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACA 319479 || |||||||| |||||| ||| ||||| ||| || |||||| || Sbjct 24391 TTGCCCTTGTAGCATACCAGCTTC---TTACCCTCGTAGTGGTAGATGTCGGTGCAGACC 24335 Query 319480 GCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATC 319539 | || ||||| ||||||||||| || ||||||| || | | ||| | | || | Sbjct 24334 TCATCCAGGAAGCCGGAGTCGTGGGAAACAATCAAGCTGGTGATTTCCGTGTGCTTCTTG 24275 Query 319540 AGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGA 319599 ||||| || || ||| | ||| | || | |||||| ||||| ||||| || Sbjct 24274 AGGTAGTCTTGCAGCCAGGCAATGTTTGCAACGTCCAAATGGTTAGTCGGTTCGTCCAGT 24215 Query 319600 AGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 319659 || | | | ||| || ||||| ||||| || || || || ||||| ||||| || Sbjct 24214 AGGAAGACATCAGCGCGCATAAGCATGGCACGGGCGAGGGCAAGCTTCATCTTCCAACCA 24155 Query 319660 CCGGAAAGAG 319669 |||||||||| Sbjct 24154 CCGGAAAGAG 24145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057762874301300