Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 230 2e-55
seq1133 131 2e-25
seq4234 111 2e-19
>seq4397
Length=39634
Score = 230 bits (254), Expect = 2e-55
Identities = 332/463 (72%), Gaps = 4/463 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027
|||||| |||| |||||||||| ||||| || || |||||| || || ||| || |
Sbjct 29261 CCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACA-AGAACTCGAC 29319
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||| |||||| | || ||||||||||||||||| ||||||| ||| |||
Sbjct 29320 CTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTT 29379
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147
|||| |||| || ||||||||||| || ||||||||||| || |||||||| ||| ||
Sbjct 29380 CGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGA 29439
Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207
||||||||| | || ||||| ||||| |||||| ||||| |||||||| ||| |
Sbjct 29440 GCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACAT 29499
Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
| | || ||| | | ||| | ||||| ||||||| || |||| |||||
Sbjct 29500 CAAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGA 29559
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326
| || |||||||| || || || || || ||| || || | || |||| | |
Sbjct 29560 GAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAA-CGCGACTCTCA 29618
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
||| || |||||||||||||| || ||| | |||||| | | ||||| | | |||
Sbjct 29619 TGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGT 29678
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429
|||||||| || ||||||| | ||||| ||| | ||||||
Sbjct 29679 ACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTC 29721
Score = 178 bits (196), Expect = 1e-39
Identities = 213/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 28872 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 28931
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| ||||||| | |||| | ||||| |||||||| ||||||
Sbjct 28932 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCC 28991
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || |||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 28992 CACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGC 29051
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| |||| ||||| ||| | ||||||| || ||||||||||| || ||||| ||
Sbjct 29052 TTCAGCTC-CGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGAT 29110
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | || || || | || ||| ||||||||||| |||
Sbjct 29111 GGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATAC 29156
>seq1133
Length=54950
Score = 131 bits (144), Expect = 2e-25
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| |||||
Sbjct 54461 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAG 54519
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| || ||||| ||| |||| ||||| || ||||||| ||| |||
Sbjct 54520 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGC 54579
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | ||||| |||| |||||||||||||||||||||| | || ||
Sbjct 54580 AAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTT 54639
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || | ||| || | || ||
Sbjct 54640 CACCTCGTCCTCCGCCTGCGTGGTGG 54665
Score = 125 bits (138), Expect = 7e-24
Identities = 141/186 (76%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| ||||||||| |||| ||||| | | ||||| | | | |||| |||||
Sbjct 54746 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG-TCAAGAG 54804
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| |||||||| ||| |||||||||| || || || | ||| |||||
Sbjct 54805 CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAA 54864
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||| || |||||||||||||||||||||| ||| || ||
Sbjct 54865 GCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCA 54924
Query 40893 TCTAGT 40898
|| ||
Sbjct 54925 CCTCGT 54930
>seq4234
Length=93090
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || || |||| ||||||||| ||||| ||
Sbjct 35831 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35772
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || |||||||||||||||||||||| | || || || || ||| |
Sbjct 35771 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35712
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 35711 CGCCTGCGTGGTGG 35698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515190154517600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |