Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4397 230 2e-55 seq1133 131 2e-25 seq4234 111 2e-19 >seq4397 Length=39634 Score = 230 bits (254), Expect = 2e-55 Identities = 332/463 (72%), Gaps = 4/463 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 |||||| |||| |||||||||| ||||| || || |||||| || || ||| || | Sbjct 29261 CCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACA-AGAACTCGAC 29319 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| |||||| | || ||||||||||||||||| ||||||| ||| ||| Sbjct 29320 CTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTT 29379 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 |||| |||| || ||||||||||| || ||||||||||| || |||||||| ||| || Sbjct 29380 CGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGA 29439 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 ||||||||| | || ||||| ||||| |||||| ||||| |||||||| ||| | Sbjct 29440 GCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACAT 29499 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | | || ||| | | ||| | ||||| ||||||| || |||| ||||| Sbjct 29500 CAAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGA 29559 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 | || |||||||| || || || || || ||| || || | || |||| | | Sbjct 29560 GAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAA-CGCGACTCTCA 29618 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || |||||||||||||| || ||| | |||||| | | ||||| | | ||| Sbjct 29619 TGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGT 29678 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||||| || ||||||| | ||||| ||| | |||||| Sbjct 29679 ACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTC 29721 Score = 178 bits (196), Expect = 1e-39 Identities = 213/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 28872 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 28931 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | |||| | ||||| |||||||| |||||| Sbjct 28932 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCC 28991 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| || Sbjct 28992 CACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGC 29051 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||||| ||| | ||||||| || ||||||||||| || ||||| || Sbjct 29052 TTCAGCTC-CGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGAT 29110 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | || || || | || ||| ||||||||||| ||| Sbjct 29111 GGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATAC 29156 >seq1133 Length=54950 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| ||||| Sbjct 54461 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAG 54519 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || ||||| ||| |||| ||||| || ||||||| ||| ||| Sbjct 54520 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGC 54579 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||| |||| |||||||||||||||||||||| | || || Sbjct 54580 AAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTT 54639 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| || | || || Sbjct 54640 CACCTCGTCCTCCGCCTGCGTGGTGG 54665 Score = 125 bits (138), Expect = 7e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| ||||| | | ||||| | | | |||| ||||| Sbjct 54746 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG-TCAAGAG 54804 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| |||||||||| || || || | ||| ||||| Sbjct 54805 CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAA 54864 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||| || |||||||||||||||||||||| ||| || || Sbjct 54865 GCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCA 54924 Query 40893 TCTAGT 40898 || || Sbjct 54925 CCTCGT 54930 >seq4234 Length=93090 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||||||||| ||||| || Sbjct 35831 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35772 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||||||||||||| | || || || || ||| | Sbjct 35771 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35712 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 35711 CGCCTGCGTGGTGG 35698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190154517600