Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1314 120 5e-23
seq3741 105 1e-18
>seq1314
Length=56922
Score = 120 bits (132), Expect = 5e-23
Identities = 209/316 (66%), Gaps = 50/316 (16%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| | | ||||| | || || |||||||| || ||||||||||| |||||
Sbjct 7682 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 7624
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533
||||||||| ||||||||||| || ||||||||| | ||||
Sbjct 7623 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGTATTTCTGCCAGTAAGTCCTGCTCCTC 7564
Query 16534 ------------------------------ATTGGTCTATGAAGAGATTCGTGATGTTTT 16563
| || |||| || |||| |||| ||| |
Sbjct 7563 TCGCTCCCGCTGCCGCCGCTAACCCCCGCCAGTGATCTACGAGGAGACCCGTGGTGTCCT 7504
Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623
||||| ||||||| || ||| |||| ||||||| || ||| ||||||||||| || ||
Sbjct 7503 GAAGACCTTCCTCGAGGGCGTGATCCGTGATGCTGTCACCTACACCGAGCACGCCAAGCG 7444
Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683
||||| ||||||||| | || |||||||||| | || | |||||||||| | ||
Sbjct 7443 CAAGACCGTCACCTCCCTCGACGTCGTCTATGCCCTCAAGAGGCAAGGCCGTACCCTCTA 7384
Query 16684 TGGTTTTGGAAGTTAA 16699
||||| || |||||
Sbjct 7383 CGGTTTCGGCGGTTAA 7368
>seq3741
Length=33614
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||||| | || ||||||||||| || ||||||||||| ||||
Sbjct 15518 CGCCAAGCGTCACCGCAAGATCT-TGCGCGATAACATCCAGGGTATCACCAAGCCCGCTA 15460
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| ||||| ||||| || ||||||||| | ||||
Sbjct 15459 TCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 15418
Score = 86.0 bits (94), Expect = 1e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || || | |||| |||| | ||| ||||||| || || |||| ||| |
Sbjct 15358 TGATCTACGAGGAAACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 15299
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | || ||||||| |
Sbjct 15298 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 15239
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
| | || || || ||||||| | || ||||| || ||||| || ||
Sbjct 15238 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAAACTCCT 15189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071076475430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |