Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4286 123 5e-23 seq3677 100 6e-16 seq4397 89.7 1e-12 >seq4286 Length=94709 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 90430 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATTCTGCTCAAC 90489 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | ||||||||| |||| || ||||| | || ||||| || | Sbjct 90490 CAGACTCACCTGCGTCTGAAGCGTGGCCACCGCTACGGTCTTCTGGGCCCCAACGGTTCC 90549 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 90550 GGTAAGACCACCCTCATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 90608 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || || || ||||||||| | ||||| Sbjct 90609 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 90650 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || |||||||| || |||| ||||| Sbjct 91245 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACTCTCGTCAACGTCCT 91304 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | ||||| ||| || | | || ||||| || || || Sbjct 91305 GACTGGTGAGCTCATCCCCACTTCGGGTGAGGTCTACCACCACGAGAACATCCGTATTGC 91364 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| ||| ||||||||| ||||| ||||| || || | | Sbjct 91365 CTACATCAAGCAGCACGCCTTCGCCCACATCGACCACCACTTGGACTCTACCCCCTCCGA 91424 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 91425 GTACATCCAGTGGCG 91439 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 90790 TCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 90848 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || ||||| || ||||| ||||||||||||||| || ||||| || ||||| Sbjct 90849 CGATATTCTTCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 90908 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 91834 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 91893 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 91894 TC-GTGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 91952 >seq3677 Length=33981 Score = 100 bits (110), Expect = 6e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| |||||| | || ||||| || || Sbjct 24138 GTCGGATCTCTTTCCGGTGGTTGGAAGATGAAGCTTGCCCTCGCCCGTGCCATGCTTATG 24197 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || |||||| | || || || || || || ||||| ||||| | ||| | ||| Sbjct 24198 CGCGCTGATGTCTTCCTACTGGACGAACCGACTAACCATTTGGACGTTGCAAACATTGCC 24257 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| |||||| | | | | | | | | | | ||||| || |||||| Sbjct 24258 TGGCTGCAAGACTACCTCAAGAAGCACACGGAAATCACCAGCTTGATTGTTTCCCACGAC 24317 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 || |||||||| |||| || ||| | | |||| ||||| ||| Sbjct 24318 TCCGGCTTCCTGGATGAGGTCTGCACCGACATCTACCACTACGAG 24362 >seq4397 Length=39634 Score = 89.7 bits (98), Expect = 1e-12 Identities = 263/401 (66%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 29748 TCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 29689 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| | ||| || || || | | |||||| || || ||||| | Sbjct 29688 GAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATG 29629 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||||| | | |||| |||| || || || Sbjct 29628 TACTGGCACATGAGAGTCGCGTTCATGCCAAGAAGAGCGAC-GGGAAGAGCGTCCGTGAG 29570 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||||| ||| | | || ||||| | || || || | | | | Sbjct 29569 GAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACGGATTCGGGGCTGGG 29510 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGG--TGCAGACCCTCGTCG 251859 ||| || | | ||| |||| || | | || || || |||| ||||| ||| Sbjct 29509 CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAA--GTCGGTATGCATGCCCTCATCG 29452 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||||| ||| ||||| | | || |||||||| | ||||| ||| |||||||| Sbjct 29451 CGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAG 29392 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 || || | | || || || ||| | | ||||||||| Sbjct 29391 AAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 29351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027777407092910