Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1133 131 3e-25 seq4286 104 4e-17 seq1679 98.7 2e-15 seq3677 86.0 1e-11 >seq1133 Length=54950 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || ||| | Sbjct 54665 CCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 54606 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || ||| Sbjct 54605 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGA 54546 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| ||||||||||| | || || || Sbjct 54545 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 54486 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 54485 TCGAGGGTGATGGTCTTGCCGGTGA 54461 Score = 122 bits (134), Expect = 2e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || ||| ||| || |||||||| || ||||| Sbjct 54948 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 54889 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || ||| Sbjct 54888 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 54829 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||| ||||||||||| ||| || || || Sbjct 54828 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTC-GCTCGACTCGAC 54770 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 54769 CTCGAGGGTGATGGTCTTGCCAGT 54746 >seq4286 Length=94709 Score = 104 bits (114), Expect = 4e-17 Identities = 666/1043 (64%), Gaps = 54/1043 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| ||||| ||||| || || ||| ||| || Sbjct 91439 CGCCACTGGATGTACTCGGAGGGGGTAGAGTCCAAGTGGTGGTCGATGTGGGCGAAGGCG 91380 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| || | | || ||| ||| || Sbjct 91379 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGGTGGTAGACCTCACCCGAAGTGGGG 91320 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || || ||||| |||| ||| |||| |||||| ||||| ||||||||||| Sbjct 91319 ATGAGC-TCACCAGTCAGGACGTTGACGAGAGTAGACTTGCCAGCACCGTTGGGGCCAAT 91261 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218 ||| |||| ||||| | || | | ||| || | | || | |||||| |||| Sbjct 91260 GACGGCAATACGGGA-GCCAAGAGAGCACTGGAAGGTGATGTCGG---AGATCTG-GGGC 91206 Query 225219 C---AGTTT----GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 || | |||| |||| || | | | | ||||| | ||||| Sbjct 91205 TTGGAGGTACCGGGGTACTGGAAGGTCATGTTGCTGACACGGACAATGGCCTTGGCCTTG 91146 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTC 225331 | | | |||||| ||||| |||||||||||||||| ||| || | | | | Sbjct 91145 GTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAACTTGAACTCCATCTCGGAGGCACCG 91086 Query 225332 AGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGG 225391 || ||||||||||| || || ||| ||||| | || | ||| || || Sbjct 91085 AGCTCGTAGTAAGACTTGGCGGAAGGAACCTTCTTGACGAACTCGGAGATGTTACCACGG 91026 Query 225392 TGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC-GTCAA 225449 | | ||||||||| | || |||| || | || ||| | | || ||| | Sbjct 91025 TAACGCTTGAGCTTGAAGCGCT---CGTAGTGGATAACGTGCTGG--ATGGTGTTGTCCA 90971 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGGT 225506 ||| ||||||||||| | |||||||| | || | | || | | ||||| Sbjct 90970 AGAACTTGGAGTCGTGGGAGATGATGATGGAGGTGCAAG---GAGAGTTGAC---GAGGT 90917 Query 225507 GCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | || | |||||| || ||||| |||||||||||||||| || || ||||| || || Sbjct 90916 AC-TGCTCGAGCCAAGCAACGTTCTTGACGTCCATGTGGTTGGTGGGCTCGTCGAGCAGA 90858 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | || || || ||| || | |||| ||||||||| ||||| || || Sbjct 90857 AGAATATCGGGCTCCTCGAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCA 90798 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTT-CGT-CAAAGCCGTACTCCAGGAGCG 225683 || || ||| ||| | | | | || ||| || | || ||| ||||| |||| Sbjct 90797 GAGAGCGAGGTGATGGGAGCCTCGAACT--GCTCGCGAACGAAACCGAACTCCTCGAGCT 90740 Query 225684 T---CTGGATAA-----TGCG-CTCGG-GAGAGCTGCGAGCGGCAACGTTGGGGTCGGAC 225733 | ||||| | || | || || || | | || ||| ||| || || | Sbjct 90739 TGTTCTGGACATCCTCCTGGGTCTTGGTGACACCAGC-AGCCTCAAGCTTCTTCATGGTC 90681 Query 225734 GAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTAC 225793 || ||| | ||||| || | | | | | ||| | |||||| || ||||| Sbjct 90680 CAGCC--AATGA----CGGTCTGCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCGACGTAG 90627 Query 225794 ACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGG 225853 || ||| || || || | |||||| ||||| ||||| | || || ||||| Sbjct 90626 ACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGC 90567 Query 225854 AGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTG 225913 | ||||| |||| || | |||||||| || | || ||||| | | || ||||| Sbjct 90566 ATGAGGGTGGTCTTACCGGAACCGTTGGGGCCCAGAAGACCGTAGCGGTGGCCACGCTTC 90507 Query 225914 ATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAA 225973 | ||| | || ||| || || |||||| |||| ||||| |||||||| ||| Sbjct 90506 AGACGCAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAG 90447 Query 225974 TCGCACAGGTCCTCACCCTCCTC 225996 | |||||| |||||||||||||| Sbjct 90446 TTGCACAGATCCTCACCCTCCTC 90424 >seq1679 Length=130797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 282/431 (65%), Gaps = 2/431 (0%) Strand=Plus/Minus Query 59091 AGTAGAGCATGCCGGACAGGAAGCAGGCCTTTTGGCGGAAGCTCAGATTGGACTTCCAGA 59150 |||| | |||||| |||| | || | || ||| ||| || ||||| |||||| Sbjct 95691 AGTACATCATGCCCGACAAATAACATACTTTCTGGATGAAAGAGAGCTTGGATCTCCAGA 95632 Query 59151 AGTGGGGGTTGGTGCACAGAGTCGTGGAACCCAGCGCCCAACGGTATTGCTGGCTGAAGA 59210 | | || || ||| |||||| |||||||||| ||| || ||||||| ||| | Sbjct 95631 ACTCTGGATTTGTGAGCAGAGTTGTGGAACCCATGCACCAGCGCATTTGCTGGGAGAAAA 95572 Query 59211 ACGACTTGAGCTCGTAGGGGCAAACTCCCTTGGCAAGGTTCAGGGGAATGTACTTGAGCT 59270 ||| | | | || ||||| || || ||||| ||| |||| ||||| || | Sbjct 95571 ACGCGCGGGGATTGTCAGGGCAGACGCCGGCAGCAAGACACAGAGGAACGTACTCGACCG 95512 Query 59271 TCCAGCCGTCGTCAACTACTGCAAAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAG 59330 |||| || |||||| | |||| || |||||||| || ||| | || ||||| | Sbjct 95511 TCCACCCACGGTCAACAGCCCCAAAACCAGTGTGGACATCTTCGGAATATCCGATCTCTG 95452 Query 59331 CAGTGCCGCCGAAAGGTACAAGCGCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACA 59390 |||||||||| | | || || || || ||||| || || | || ||||| | Sbjct 95451 CAGTGCCGCCCACCTCAGCCAGAGCTTCACGACGGTACACGGCATTGCTGCCCACGCAGA 95392 Query 59391 CGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGG 59450 | | | || || || ||| ||||| | | |||||||| || || || || Sbjct 95391 TCGAGGCCCCCCAGCGGTTGCGGTTGACCTGAACAACGCGGTAGAAAAGCTCTTGACAGG 95332 Query 59451 ATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGGGCGAACCTC-GAAGAACTGGGGGGTC 59509 || ||| | |||| ||||| || || || ||| || || ||||||||| || | | Sbjct 95331 CGCCGGCACCCTGCTCCACCCATGTGTGCTC-AGGCAAAGTTCGGAAGAACTGAGGAGAC 95273 Query 59510 TGCACAATCGC 59520 || || ||||| Sbjct 95272 TGGACGATCGC 95262 >seq3677 Length=33981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 || |||||||| ||||||||||| ||||| | | | | | ||| | ||||||| Sbjct 24331 TCCAGGAAGCCGGAGTCGTGGGAAACAATCAAGCTGGTGATTTCCGTGTGCTTCTTGAGG 24272 Query 225506 TGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 | || || ||||| || | ||| ||||||| ||||| || ||||||||||| || Sbjct 24271 TA-GTCTTGCAGCCAGGCAATGTTTGCAACGTCCAAATGGTTAGTCGGTTCGTCCAGTAG 24213 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 | || ||||| || || ||||| || | ||| | |||||||| ||||| || || Sbjct 24212 GAAGACATCAGCGCGCATAAGCATGGCACGGGCGAGGGCAAGCTTCATCTTCCAACCACC 24153 Query 225625 GGACAGGGAGCCGA 225638 ||| || || |||| Sbjct 24152 GGAAAGAGATCCGA 24139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||| | ||| |||||| ||||| || | |||||||||||| ||| | |||| ||| Sbjct 24816 GGTCGTCGCCATTGGCATAACGCCATTGCAGGTACTGGTTGGGTGTCTTCTCCATGTGCA 24757 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 |||| | || | || |||||||| | ||| | || |||| ||||||||||||| Sbjct 24756 TCTCGACGTGCTCGAGCGCATGCTGCTTGATGTAACCAATACGCAAGTTGGGATGCTTCT 24697 Query 225081 ACACAGAGCCCCGAGTCGGTTG--TG-CCTCGCCGGTGAGGACCTTGATGAGCGTAGTCT 225137 || ||| |||| | | || | || || || || ||||||||||| || | || Sbjct 24696 CGACTTTGCC---AGTCTGCGGGATGACTTCACCAGTCAGAACCTTGATGAGTGTGGACT 24640 Query 225138 TGCCCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179 |||| || || || | ||| || | | | | ||||| |||| Sbjct 24639 TGCCGGCTCCGTTTGCGCCGATGATGGCGACACGGGAAGACA 24598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921570443537200