Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4397 123 5e-23 seq3677 93.3 9e-14 seq4286 87.8 4e-12 >seq4397 Length=39634 Score = 123 bits (136), Expect = 5e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || || | ||| ||||| ||| | |||||| |||| | Sbjct 29534 ATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCT 29593 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| ||||||||||| | |||||| | ||||||||||| ||||| || |||||| | Sbjct 29594 CTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTG 29653 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | ||||| || | |||| |||||||| | |||||||| | ||| |||||| Sbjct 29654 CTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAG 29713 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| ||||| | || || || ||||||||||| ||||| || |||| || || Sbjct 29714 AACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 29769 >seq3677 Length=33981 Score = 93.3 bits (102), Expect = 9e-14 Identities = 207/310 (67%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 333684 GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGA 333743 || |||| || | |||||| ||| | ||||| || ||| |||||||||| ||| Sbjct 24451 GTATCGGAGAGAGTGTAGTAGCTCTTGGCCTCGGGTTTCTGCTTGACGAACTCGGCCAGG 24392 Query 333744 TTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACA 333803 || |||||||| |||||| ||| ||||| ||| || |||||| || Sbjct 24391 TTGCCCTTGTAGCATACCAGCTTC---TTACCCTCGTAGTGGTAGATGTCGGTGCAGACC 24335 Query 333804 GCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATC 333863 | || ||||| ||||||||||| || ||||||| || | | ||| | | || | Sbjct 24334 TCATCCAGGAAGCCGGAGTCGTGGGAAACAATCAAGCTGGTGATTTCCGTGTGCTTCTTG 24275 Query 333864 AGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGA 333923 ||||| || |||||| | ||| | || | |||||| ||||| ||||| || Sbjct 24274 AGGTAGTCTTGCAGCCAGGCAATGTTTGCAACGTCCAAATGGTTAGTCGGTTCGTCCAGT 24215 Query 333924 AGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 333983 || | | | ||| || ||||| ||||| || || || || ||||| ||||| || Sbjct 24214 AGGAAGACATCAGCGCGCATAAGCATGGCACGGGCGAGGGCAAGCTTCATCTTCCAACCA 24155 Query 333984 CCTGAAAGAG 333993 || ||||||| Sbjct 24154 CCGGAAAGAG 24145 >seq4286 Length=94709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| |||| || || ||||| || || | ||||| | || Sbjct 90603 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 90544 Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299 ||| || |||| | ||||||||||||| |||||||||||| | | || | ||| | Sbjct 90543 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 90485 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || ||||| || || || | |||||||||||||| Sbjct 90484 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 90430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102816270768500