Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 123 5e-23
seq3677 93.3 9e-14
seq4286 87.8 4e-12
>seq4397
Length=39634
Score = 123 bits (136), Expect = 5e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561
|||||||| || || || || | ||| ||||| ||| | |||||| |||| |
Sbjct 29534 ATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCT 29593
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
||| ||||||||||| | |||||| | ||||||||||| ||||| || |||||| |
Sbjct 29594 CTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTG 29653
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
| | ||||| || | |||| |||||||| | |||||||| | ||| ||||||
Sbjct 29654 CTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAG 29713
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||| ||||| | || || || ||||||||||| ||||| || |||| || ||
Sbjct 29714 AACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCA 29769
>seq3677
Length=33981
Score = 93.3 bits (102), Expect = 9e-14
Identities = 207/310 (67%), Gaps = 3/310 (1%)
Strand=Plus/Minus
Query 333684 GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGA 333743
|| |||| || | |||||| ||| | ||||| || ||| |||||||||| |||
Sbjct 24451 GTATCGGAGAGAGTGTAGTAGCTCTTGGCCTCGGGTTTCTGCTTGACGAACTCGGCCAGG 24392
Query 333744 TTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACA 333803
|| |||||||| |||||| ||| ||||| ||| || |||||| ||
Sbjct 24391 TTGCCCTTGTAGCATACCAGCTTC---TTACCCTCGTAGTGGTAGATGTCGGTGCAGACC 24335
Query 333804 GCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATC 333863
| || ||||| ||||||||||| || ||||||| || | | ||| | | || |
Sbjct 24334 TCATCCAGGAAGCCGGAGTCGTGGGAAACAATCAAGCTGGTGATTTCCGTGTGCTTCTTG 24275
Query 333864 AGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGA 333923
||||| || |||||| | ||| | || | |||||| ||||| ||||| ||
Sbjct 24274 AGGTAGTCTTGCAGCCAGGCAATGTTTGCAACGTCCAAATGGTTAGTCGGTTCGTCCAGT 24215
Query 333924 AGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 333983
|| | | | ||| || ||||| ||||| || || || || ||||| ||||| ||
Sbjct 24214 AGGAAGACATCAGCGCGCATAAGCATGGCACGGGCGAGGGCAAGCTTCATCTTCCAACCA 24155
Query 333984 CCTGAAAGAG 333993
|| |||||||
Sbjct 24154 CCGGAAAGAG 24145
>seq4286
Length=94709
Score = 87.8 bits (96), Expect = 4e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240
|||||| || |||||||| |||| || || ||||| || || | ||||| | ||
Sbjct 90603 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 90544
Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299
||| || |||| | ||||||||||||| |||||||||||| | | || | ||| |
Sbjct 90543 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 90485
Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354
| ||||| || |||| || ||||| || || || | ||||||||||||||
Sbjct 90484 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 90430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102816270768500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |