Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 150 2e-31
seq1133 91.5 1e-13
>seq4397
Length=39634
Score = 150 bits (166), Expect = 2e-31
Identities = 172/226 (76%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673
||||| || | ||||| |||||||| | |||| ||| || || |||| || || |||
Sbjct 29543 GAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGC 29602
Query 52674 ATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
||||||||| | || ||||||| ||||||||||||| || || || || ||| |||||
Sbjct 29603 ATGAACGCG-ACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGC 29661
Query 52733 GCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791
||| ||||| | | ||||||| |||| | ||| || || || || ||| | ||||| |
Sbjct 29662 GCT-GGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCT 29720
Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| | |||||||| ||||| ||||||||||| || || || ||
Sbjct 29721 CGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 29766
>seq1133
Length=54950
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| || ||| || ||||||||| || || |||| |
Sbjct 54913 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54854
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
|| || ||||| |||||||| || || || || ||||| ||| || || | |
Sbjct 54853 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 54794
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
|| | ||||||| ||||||| ||||||| || | || || |||||||
Sbjct 54793 GTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 54744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496234423207200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |